PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1744980.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 68aa    MW: 8010.08 Da    PI: 8.9754
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1744980.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14e-08446344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WTt   +l+ da + +  +   +W  Ia+ +g  ++ +++k ++
  Lj2g3v1744980.1  4 SWTTRQNKLFEDALAIYDREtpdRWQNIAKLVG--KSVEEVKRHY 46
                     7*****************88************8..9********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.8E-6152IPR001005SANT/Myb domain
PROSITE profilePS5129312.6154IPR017884SANT domain
SuperFamilySSF466898.21E-13357IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-4456IPR009057Homeodomain-like
CDDcd001671.01E-4446No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
MGSSWTTRQN KLFEDALAIY DRETPDRWQN IAKLVGKSVE EVKRHYEILV EDVKRIERGQ  60
VPFPYKGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-25264871RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1744980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156054.11e-34hypothetical protein PHAVU_003G254400g
SwissprotF4JVB82e-26RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A4P1QTH03e-36A0A4P1QTH0_LUPAN; Uncharacterized protein
STRINGGLYMA16G25260.21e-35(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.19e-29RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]