PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1717640.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family DBB
Protein Properties Length: 186aa    MW: 20697.6 Da    PI: 6.583
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1717640.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.72.1e-07433534
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                      C+ +e+  ++ fC  ++  lC+ C ++ H
  Lj2g3v1717640.1  4 LCDACESAAAIVFCAADEAALCRACDEKVH 33
                     7**************************998 PP
2zf-B_box31.73.1e-105292238
         zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                     + ++C+ +e+ ++ ++Ce++++ lC +C +  H g    H+
  Lj2g3v1717640.1 52 DVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGgkrtHR 92
                     5799**************************99966666776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.8E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.239147IPR000315B-box-type zinc finger
CDDcd000213.03E-6345No hitNo description
PfamPF006437.9E-6334IPR000315B-box-type zinc finger
SuperFamilySSF578457.1E-64888No hitNo description
PROSITE profilePS501199.4425196IPR000315B-box-type zinc finger
SMARTSM003364.0E-125196IPR000315B-box-type zinc finger
PfamPF006435.9E-85292IPR000315B-box-type zinc finger
CDDcd000219.86E-85493No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MRTLCDACES AAAIVFCAAD EAALCRACDE KVHLCNKLAS RHVRVGLASP SDVPRCDICE  60
NAPAFFYCET DGSSLCLQCD MIVHVGGKRT HRRYLLFRQR IEFPGDKSSH AENPASLPLE  120
PGEAKRGQNP LPKLKMGEKL QNHMMPLVPM PEPEGDGQSK METEMFDLNM NPNRIHEQAS  180
NNHQHP
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in vasculature of leaves and petioles. {ECO:0000269|PubMed:20872270}.
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis (PubMed:18540109). Acts as a negative regulator of blue light-mediated inhibition of hypocotyl elongation through increase of bioactive gibberellin levels (PubMed:20872270). Acts as a repressor of thermotolerance by modulating expression of a set of heat shock-responsive genes (PubMed:23238922). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:20872270, ECO:0000269|PubMed:23238922}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1717640.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By blue light (PubMed:20872270) and heat shock (at protein level) (PubMed:23238922). {ECO:0000269|PubMed:20872270, ECO:0000269|PubMed:23238922}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1458860.0BT145886.1 Lotus japonicus clone JCVI-FLLj-3K15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241539.11e-122uncharacterized protein LOC100795117
RefseqXP_006590310.11e-122uncharacterized protein LOC100795117 isoform X1
RefseqXP_006590311.11e-122uncharacterized protein LOC100795117 isoform X2
RefseqXP_028186834.11e-122B-box zinc finger protein 18-like isoform X1
RefseqXP_028186835.11e-122B-box zinc finger protein 18-like isoform X2
SwissprotQ9SJU55e-73BBX18_ARATH; B-box zinc finger protein 18
TrEMBLI3SZI81e-136I3SZI8_LOTJA; Uncharacterized protein
STRINGGLYMA11G07930.11e-121(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21320.12e-75DBB family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang X,Lin R
    Light signaling differentially regulates the expression of group IV of the B-box zinc finger family.
    Plant Signal Behav, 2017. 12(9): p. e1365213
    [PMID:28922622]