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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v1706540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | NAC | ||||||||
Protein Properties | Length: 328aa MW: 38183.2 Da PI: 5.4963 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 177.6 | 3.4e-55 | 9 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppGfrFhPtdeelv +yL+kk++++k++l +vi+e+d+y++ePwdL + ++ e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+dk+ Lj2g3v1706540.1 9 VPPGFRFHPTDEELVGYYLRKKIASQKIDL-DVIREIDLYRIEPWDLIErcRIGYeEQSEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKA 101 69****************************.9***************743433332566*********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 v++ k +l+g++ktLvfykgrap+g+ktdW+mheyrle Lj2g3v1706540.1 102 VYD-KMKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLE 138 ***.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-60 | 5 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.261 | 9 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.5E-29 | 10 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0048759 | Biological Process | xylem vessel member cell differentiation | ||||
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis | ||||
GO:1990110 | Biological Process | callus formation | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MMESMESCVP PGFRFHPTDE ELVGYYLRKK IASQKIDLDV IREIDLYRIE PWDLIERCRI 60 GYEEQSEWYF FSHKDKKYPT GTRTNRATMA GFWKATGRDK AVYDKMKLIG MRKTLVFYKG 120 RAPNGQKTDW IMHEYRLETD ENGPPQEEGW VVCRAFKKKT TNSQTKTMEG WDSSYFYDEA 180 SVVSSVVDPL DLISRQPPQR FLAQSFMCKQ EIEAENLRHH MNPEQFIQLP QLESPSVPLM 240 KRPSTVVSLV SDNNNEDHDD QNRLLLSNKK VTDWRDLDKF VASQLSQETE GLPSFENHGG 300 SDMALFEGTK LSPFLSTSEI LTSLWLFN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-51 | 6 | 160 | 12 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element formation. Expressed preferentially in procambial cells adjacent to root meristem. {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in root metaxylem pole and in shoot pre-procambium and procambium (PubMed:18445131). Present in root developing xylems (PubMed:16103214). Specifically expressed in vessels but not in interfascicular fibers in stems (PubMed:25148240). {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:18445131, ECO:0000269|PubMed:25148240}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00266 | DAP | Transfer from AT2G18060 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v1706540.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT147274 | 1e-166 | BT147274.1 Medicago truncatula clone JCVI-FLMt-4I24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027361660.1 | 0.0 | NAC domain-containing protein 37-like | ||||
Refseq | XP_027361661.1 | 0.0 | NAC domain-containing protein 37-like | ||||
Swissprot | Q9SL41 | 1e-149 | NAC37_ARATH; NAC domain-containing protein 37 | ||||
TrEMBL | A0A061DFT4 | 0.0 | A0A061DFT4_THECC; Vascular related NAC-domain protein 1 isoform 1 | ||||
TrEMBL | A0A4D6LSR5 | 0.0 | A0A4D6LSR5_VIGUN; Uncharacterized protein | ||||
STRING | EOX90892 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4565 | 34 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18060.1 | 1e-148 | vascular related NAC-domain protein 1 |
Publications ? help Back to Top | |||
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