PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v1550200.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | BES1 | ||||||||
Protein Properties | Length: 656aa MW: 74168.6 Da PI: 6.2108 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 153.2 | 1.9e-47 | 51 | 192 | 1 | 137 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssas.aspess 93 +g+g+k+++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+reAGwvv++DGttyr+ + p+ +++gs+a +s+e++ Lj2g3v1550200.2 51 AGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVDADGTTYRQ-CPPP---SHMGSFAAaRSVETQ 140 5899******************************************************************5.4444...355555543677777 PP DUF822 94 lq.sslkssalaspvesysaspksssfpspssldsislasa.......asll 137 l+ sl++++++ +e++ ++++ ++ +sp+s+ds+ la+ as + Lj2g3v1550200.2 141 LSaGSLRACSVKETLENQPPVLRIDECLSPASIDSVVLAERdsksrkfASAS 192 77779********************************998865444444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 8.6E-49 | 52 | 200 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
SuperFamily | SSF51445 | 4.41E-158 | 218 | 652 | IPR017853 | Glycoside hydrolase superfamily |
Gene3D | G3DSA:3.20.20.80 | 2.2E-170 | 221 | 651 | IPR013781 | Glycoside hydrolase, catalytic domain |
Pfam | PF01373 | 5.8E-85 | 242 | 626 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.5E-56 | 258 | 272 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.5E-56 | 279 | 297 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.5E-56 | 301 | 322 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.5E-56 | 394 | 416 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.5E-56 | 467 | 486 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.5E-56 | 501 | 517 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.5E-56 | 518 | 529 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.5E-56 | 536 | 559 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.5E-56 | 574 | 596 | IPR001554 | Glycoside hydrolase, family 14 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000272 | Biological Process | polysaccharide catabolic process | ||||
GO:0048831 | Biological Process | regulation of shoot system development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0016161 | Molecular Function | beta-amylase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 656 aa Download sequence Send to blast |
MKNTNDDVSA QDLDPQSDHS SDYLAHSHQL SQPQPRRPRG FAAAAAGVNS AGKGKKEREK 60 EKERTKLRER HRRAITSRML AGLRQYGNFP LPARADMNDV LAALAREAGW VVDADGTTYR 120 QCPPPSHMGS FAAARSVETQ LSAGSLRACS VKETLENQPP VLRIDECLSP ASIDSVVLAE 180 RDSKSRKFAS ASPIDSVDCL EADQLMQVMH TGVHENDFTG TPYVPVYIKL PVGIINKFCQ 240 LIDPEGIRQE LIHIKSLNID GVVVDCWWGI VEGWSPQKYV WSGYRELFNI IREFKLNLQV 300 VMAFHECGGS DSSDALISLP QWVLDIGKDN QDIFFTDREG RRNTECLSWG IDKERVLKGR 360 TGIEVYFDMM RSFRTEFDDL FAEGLISSVE IGLGASGELK YPSFSERMGW RYPGIGEFQC 420 YDKYLQHSLR RAAKLRGHSF WARGPDNAGH YNSMPHETGF FCERGDYDNY YGRFFLHWYS 480 QTLVDHADNV LSLASLAFEE TQIIVKVPAV YWWYKTPSHA AELTAGYHNP TNQDGYSPVF 540 EVLKKHAVTM KFVCLGFHLS SQEANESLVD PEGLSWQVLN SAWDRGLIAA GENALLCYDR 600 EGHKRLVEMA KPRNDPDRRH FSFFVYQQPS LLQGNPCLSE LDFFIKCMHG EMTGDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wdq_A | 1e-127 | 223 | 613 | 11 | 401 | Beta-amylase |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.9390 | 0.0 | floral bud| root |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00543 | DAP | Transfer from AT5G45300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v1550200.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009154 | 0.0 | AP009154.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT10G21, TM1522, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027360152.1 | 0.0 | beta-amylase 8 isoform X1 | ||||
Swissprot | Q9FH80 | 0.0 | BAM8_ARATH; Beta-amylase 8 | ||||
TrEMBL | A0A1S2YZF6 | 0.0 | A0A1S2YZF6_CICAR; Beta-amylase | ||||
STRING | XP_004512346.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45300.1 | 0.0 | beta-amylase 2 |
Publications ? help Back to Top | |||
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