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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Lj2g3v1550000.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
| Family |
Trihelix |
| Protein Properties |
Length: 307aa MW: 36230.6 Da PI: 8.8596 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lj2g3v1550000.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 89.8 | 3e-28 | 49 | 130 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+Wt+qe+++ i++r e+e+++ ++k++k+lWe vs+kmrergf+rsp+qCk+kw+nl +ryk ++++ ++ ++cp+f++l+
Lj2g3v1550000.1 49 QWTQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWKNLVNRYKGKETSDPEH----GKQCPFFEELH 130
7****************************************************************999986....678******98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 307 aa
Download sequence Send
to blast |
MFGGGGDDTL AARLGMVMPS MVNPSTSSMM SGEMSVAPVR EERGPSQPQW TQQETREFIA 60
IRAELERDFT ASKRNKTLWE VVSSKMRERG FRRSPEQCKC KWKNLVNRYK GKETSDPEHG 120
KQCPFFEELH AVFTQRAQNM QRLLLESENR SAQTKKGMKR LSGDRSSEEF SEDDEVGDES 180
EEERPARSNT RKRKASDKTA MEKSSKGNNP GNNTNSASIQ EMLKEFFQHQ LRMEMQWREM 240
MERRAHERQL FEQEWRQTME KLERERLMVE QAWREREEQR RIREENRAER RDALLTTLLN 300
KLIHESN
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP009155 | 0.0 | AP009155.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT12C04, TM1523, complete sequence. |
