PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v1536360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | G2-like | ||||||||
Protein Properties | Length: 244aa MW: 27969.2 Da PI: 6.8911 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.4 | 6.5e-33 | 22 | 76 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG+ekAtPk++l+lm++kgLtl+h+kSHLQkYRl Lj2g3v1536360.1 22 KPRLRWTADLHDRFVDAVTKLGGPEKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 76 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-31 | 19 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.027 | 19 | 79 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.84E-16 | 22 | 79 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.2E-24 | 22 | 77 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.7E-9 | 24 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 5.8E-23 | 125 | 170 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MESGGGREGY DGVVMMMTRD PKPRLRWTAD LHDRFVDAVT KLGGPEKATP KSVLRLMGLK 60 GLTLYHLKSH LQKYRLGQQA RKQSDEHYKE NNRCSYVNFS HRSSGPNTSY SYRGDKEDNE 120 GGEIPIAEAL RCQIEVQKRL EEQLEVQKKL QMRIEAQGKY LQAALEKAQR SISLDGSGTL 180 EASRAQLSEF NFALSNFMEN MNRDSKDDIM DMNDFYNKSH SSAFHYQGGE REDYEDQKPK 240 IEGE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 9e-19 | 22 | 75 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 9e-19 | 22 | 75 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 9e-19 | 22 | 75 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 9e-19 | 22 | 75 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.22497 | 0.0 | root |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00544 | DAP | Transfer from AT5G45580 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v1536360.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP007306 | 1e-166 | AP007306.2 Lotus japonicus genomic DNA, chromosome 2, clone: LjT20J15, TM1492, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027913783.1 | 1e-144 | myb family transcription factor PHL11 isoform X1 | ||||
Swissprot | C0SVS4 | 3e-75 | PHLB_ARATH; Myb family transcription factor PHL11 | ||||
TrEMBL | A0A4D6LS21 | 1e-143 | A0A4D6LS21_VIGUN; Two-component response regulator ARR-B family | ||||
STRING | XP_007158199.1 | 1e-141 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5101 | 31 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 8e-76 | G2-like family protein |
Publications ? help Back to Top | |||
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