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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v1509440.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | G2-like | ||||||||
Protein Properties | Length: 376aa MW: 42031.9 Da PI: 9.5905 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102 | 3.8e-32 | 195 | 248 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Lj2g3v1509440.2 195 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 248 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.97E-15 | 192 | 248 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-28 | 193 | 248 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-23 | 195 | 248 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.5E-7 | 196 | 247 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MELFPAQPDL SLQISPPNSK PTTSSWKRST EEDMDLGFWK RALESRSSMS TSSMAKKDTG 60 FFDLSLSNPR PSESNTTIHH ANNAIANNSN NNHFQSFQQN HYFQPLFHQQ PLQHQSLSQE 120 LGFLRPIRGI PVYQNPPPMM PFTTQPHHLL EPSSTPSSLI SNTNTGSPTP NFPSQALMRS 180 RFLSRFPAKR SMRAPRMRWT TTLHARFVHA VELLGGHERA TPKSVLELMD VKDLTLAHVK 240 SHLQMYRTVK TTDRAAASSG QSDVYDNGSS GDNSDDLMFD INSSRRPELS IKQGRSNVVN 300 QEKECHGLWS NSSREAWLHG KPKNDSVGNT PSLEKEMDPK CLSYERISDG SSSSNLSGSS 360 PKKLNLDLGF TLGQPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 7e-17 | 196 | 250 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 7e-17 | 196 | 250 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 7e-17 | 196 | 250 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 7e-17 | 196 | 250 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 7e-17 | 196 | 250 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 7e-17 | 196 | 250 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 7e-17 | 196 | 250 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 7e-17 | 196 | 250 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in developing phloem. {ECO:0000269|PubMed:14561401}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00174 | DAP | Transfer from AT1G32240 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v1509440.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027360426.1 | 0.0 | probable transcription factor KAN2 isoform X1 | ||||
Swissprot | Q9C616 | 4e-95 | KAN2_ARATH; Probable transcription factor KAN2 | ||||
TrEMBL | A0A371F7I0 | 0.0 | A0A371F7I0_MUCPR; Putative transcription factor KAN2 (Fragment) | ||||
STRING | XP_007158256.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5968 | 34 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32240.1 | 4e-66 | G2-like family protein |
Publications ? help Back to Top | |||
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