PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v1495100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB | ||||||||
Protein Properties | Length: 344aa MW: 38517 Da PI: 6.6703 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62.5 | 8.7e-20 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+lvd ++++G g+W t +++ g++R++k+c++rw +yl Lj2g3v1495100.1 15 KGPWTPEEDEKLVDHINKHGHGNWGTLPKRAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.7 | 5.6e-18 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eE+ ++++++ lG++ W++Ia++++ gRt++++k++w+++ Lj2g3v1495100.1 68 RGKFTEEEERIIINLHSVLGNK-WSKIAAHLP-GRTDNEIKNFWNTH 112 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.496 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.35E-33 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-16 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-17 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-25 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.00E-12 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 28.615 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-17 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-16 | 68 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.31E-13 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-27 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MGRSPCCDNE SGVKKGPWTP EEDEKLVDHI NKHGHGNWGT LPKRAGLNRC GKSCRLRWTN 60 YLRPDIKRGK FTEEEERIII NLHSVLGNKW SKIAAHLPGR TDNEIKNFWN THIRKKLLKM 120 GIDPETHKPR TDFNHLMTLS QLLGMSTNMG NANWGNNNPL GDITQLAKLQ LLQNLMQIMG 180 SNNSLVNMGN PHNLSGIPSL NPFNVFTNTL QAKEPLVLSG EEYGNNGFCS QAQSGSPSQQ 240 DISKSWADFV DQGSYNPQVL DHNKKISSTT SCEKQEEKSS LPALVEGTFN QIDNCYNTAQ 300 TSTESPSNTN LDDWENFLID NETSGSYWKE LLDLTSTSAS PISW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-30 | 15 | 117 | 7 | 108 | B-MYB |
1h8a_C | 2e-30 | 15 | 117 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00438 | DAP | Transfer from AT4G17785 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v1495100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027360989.1 | 1e-178 | transcription factor MYB41-like | ||||
TrEMBL | A0A445J3T5 | 1e-155 | A0A445J3T5_GLYSO; Transcription factor MYB39 isoform A | ||||
TrEMBL | I1L4Y6 | 1e-155 | I1L4Y6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G33870.1 | 1e-156 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF402 | 34 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17785.1 | 7e-91 | myb domain protein 39 |