PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1471910.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 303aa    MW: 34293.2 Da    PI: 7.6653
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1471910.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.2e-1495146155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h  +Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  Lj2g3v1471910.1  95 QRMTHITVERNRRKQMNEHLAVLRSLMPES---YVQRGDQASIVSGAIEFVKELE 146
                      79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.90E-1193148No hitNo description
Gene3DG3DSA:4.10.280.101.3E-1393149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-1693166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.95894145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-1195146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-8100151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MALETLPSSD FSNFIIYDTI SATPFSSYEY SSETSLLLEE NRVKHHEHDP ALVTRKRQCG  60
EPEAVGQRRN FAVQGRKKRR RKTRICKSKE EAETQRMTHI TVERNRRKQM NEHLAVLRSL  120
MPESYVQRGD QASIVSGAIE FVKELEHLMQ SLEAKKFQLL HQGVALTSTE EDKAISNSMI  180
MTPPFANFFV HPQYTWSLAH KYTSSSETAA AAIADIEVTL IETHANLRIL TRRSPRKLSK  240
LVAGFQALFL TILHLNVTTM DPLVLFSIST KVEEGCQLGS VDDIATAVHN LLRMIDDEAS  300
LCC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17581RKKRRRK
27681KKRRRK
395106RMTHITVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1471910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019445300.11e-154PREDICTED: transcription factor bHLH71-like isoform X2
RefseqXP_019445301.11e-154PREDICTED: transcription factor bHLH71-like isoform X2
SwissprotQ9C7T41e-71BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A4P1RGY51e-153A0A4P1RGY5_LUPAN; Uncharacterized protein
STRINGXP_007156419.11e-139(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-66bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]