PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj2g3v1468080.3

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

bHLH

Protein Properties

Length: 232aa MW: 26112.6 Da PI: 4.5489

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj2g3v1468080.3	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.6	4.1e-12	87	130	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Lj2g3v1468080.3 87 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 130 589*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.491	81	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.66E-15	84	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.1E-12	87	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.5E-10	87	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.72E-4	88	134	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.0E-15	88	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	2.44E-4	174	215	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MPELDSSYTR KEESSAPPPL LPQEDNQSLD EEFGFLGSDN NQGLEQIKDS CKIEEQVSEV 60 PMVFNMGMCG EKKAKSKKLE GQPSKNLMAE RRRRKRLNDR LSMLRSIVPK ISKMDRTSIL 120 GDTIDYMKEL LERIGNLQEE ETEEGKNQID LLGISKEQKP NEAMFDVERK DQDTRISICC 180 ATKPGLLLST VNTLEALGLE IHQCVISSFS DFSLQASCSE AAGQRNCMSP EE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	96	ERRRRKRL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.5395	0.0	floral bud\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Broadly expressed. {ECO:0000269\|PubMed:17088607}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj2g3v1468080.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004576	0.0	AP004576.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT01N11, TM0177, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020217220.1	1e-132	transcription factor bHLH93 isoform X2
Swissprot	Q9LSL1	3e-68	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A151THB9	1e-126	A0A151THB9_CAJCA; Transcription factor bHLH93
STRING	GLYMA01G02390.1	1e-125	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	4e-70	beta HLH protein 93

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]