PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1468080.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 344aa    MW: 38571.4 Da    PI: 4.4505
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1468080.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.5e-12199242654
                      HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Lj2g3v1468080.1 199 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 242
                      589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.491193242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-15196255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9199242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-12199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-14200255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.25E-4200246No hitNo description
CDDcd048734.75E-4286327No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MSSKTPAIGL SSYLQRQEEQ REKNRTGMEL SHLSFLEELL APRKDTSCWN ALSTELNEPL  60
PSAWSFDSFD ENQALASLYP PFAAFSTPLD QRFECPYGSD AAAAYPFVGG FTMPELDSSY  120
TRKEESSAPP PLLPQEDNQS LDEEFGFLGS DNNQGLEQIK DSCKIEEQVS EVPMVFNMGM  180
CGEKKAKSKK LEGQPSKNLM AERRRRKRLN DRLSMLRSIV PKISKMDRTS ILGDTIDYMK  240
ELLERIGNLQ EEETEEGKNQ IDLLGISKEQ KPNEAMFDVE RKDQDTRISI CCATKPGLLL  300
STVNTLEALG LEIHQCVISS FSDFSLQASC SEAAGQRNCM SPEE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201208ERRRRKRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.53950.0floral bud| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1468080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0045760.0AP004576.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT01N11, TM0177, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027362096.11e-180transcription factor bHLH93-like isoform X2
TrEMBLA0A371I8B51e-175A0A371I8B5_MUCPR; Transcription factor bHLH93 (Fragment)
STRINGGLYMA01G02390.11e-174(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.18e-69beta HLH protein 93