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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v1451710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 213aa MW: 24258.3 Da PI: 10.9389 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.8 | 5.4e-10 | 54 | 100 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++h+e+E+rRR riN +++Lr lP+ K +Ka++L ++++ +k+L Lj2g3v1451710.1 54 KKHSEAEKRRRTRINGQYDTLRNTLPNiI------KKDKATVLSETIKQVKEL 100 68*************************55......9999****9999988887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.138 | 51 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-7 | 54 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.44E-7 | 54 | 105 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.0E-13 | 55 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-12 | 55 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.5E-9 | 57 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 3.0E-8 | 137 | 200 | No hit | No description |
CDD | cd04873 | 2.41E-7 | 140 | 184 | No hit | No description |
SuperFamily | SSF55021 | 4.08E-8 | 140 | 203 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MVSFQQGMQH FRNYYNSEAS MIGSSFPRTF LSQTYKNSFS KPRSTEEIKL LAAKKHSEAE 60 KRRRTRINGQ YDTLRNTLPN IIKKDKATVL SETIKQVKEL RKKVSKLEVD GPKEVKFPSG 120 ADRLNLEKCN EDKGMIVKAT LSCEDRPELM SAIARALRSM KANVIKAEML TVGGRTRTVL 180 WVQGIGTEGL GKLKSTLKVV MHKPSFKMRR FTQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v1451710.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027362838.1 | 1e-119 | transcription factor bHLH131 | ||||
TrEMBL | A0A1S2XKR4 | 1e-110 | A0A1S2XKR4_CICAR; transcription factor bHLH131 | ||||
STRING | XP_004489760.1 | 1e-111 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12611 | 30 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38070.1 | 3e-41 | bHLH family protein |