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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Lj2g3v1450690.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family |
MIKC_MADS |
Protein Properties |
Length: 227aa MW: 25571.2 Da PI: 6.264 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Lj2g3v1450690.1 | genome | Kazusa | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 89.9 | 1.3e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+i+n + rqvtfskRr g++KKAeELSvLCda+va+++fsstgkl+eys+
Lj2g3v1450690.1 9 KKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALVVFSSTGKLFEYSN 59
68***********************************************95 PP
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2 | K-box | 51.6 | 4e-18 | 93 | 171 | 20 | 98 |
K-box 20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98
+ ++L+ke+ + r +R+l GedL+ L+++eLqqLe+ Le++l ++ +kK e ++++i+ lq k k+l een++L++ +
Lj2g3v1450690.1 93 NCSRLNKEVAEQSRLLRQLRGEDLQGLNIEELQQLERSLETGLGRVIEKKGEKIMNEINGLQIKGKQLMEENERLKRHV 171
6789999999999**************************************************************9987 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50066 | 29.843 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.2E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.68E-39 | 2 | 77 | No hit | No description |
PRINTS | PR00404 | 1.9E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.1E-30 | 3 | 82 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.1E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 12.97 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.3E-15 | 92 | 171 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009266 | Biological Process | response to temperature stimulus |
GO:0009910 | Biological Process | negative regulation of flower development |
GO:0010076 | Biological Process | maintenance of floral meristem identity |
GO:0010582 | Biological Process | floral meristem determinacy |
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
GO:0048438 | Biological Process | floral whorl development |
GO:0005634 | Cellular Component | nucleus |
GO:0000900 | Molecular Function | translation repressor activity, nucleic acid binding |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 227 aa
Download sequence Send
to blast |
MAREKIQIKK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALVVFSS TGKLFEYSNL 60 SMKEILERHH LHSKNLAKLE QPSLELQLVE NSNCSRLNKE VAEQSRLLRQ LRGEDLQGLN 120 IEELQQLERS LETGLGRVIE KKGEKIMNEI NGLQIKGKQL MEENERLKRH VAGMISTGLM 180 HGDTESELLV MEEGHSSESV TNVCNSTTGP PLEDDSSDTS LKLGLPY
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers. |
Functional Description ? help
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Source |
Description |
UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |