PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1351570.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 245aa    MW: 26457.4 Da    PI: 7.1481
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1351570.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.6e-11161208455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Lj2g3v1351570.1 161 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 208
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.31E-10155212No hitNo description
SuperFamilySSF474596.54E-18155225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-18157225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828157207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-8161208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10163213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDPAAMMNGG ANTASYHLAE IWQFPHPVAG DSGGGLGLRR PQFGHGFGDF TTCPTREDPG  60
SDPVSSDHRQ ALTVSLGRKR RDSEEESVKG VSTSNGGGNG NDGGGDGKRM KISGNRNESS  120
KGGEAEVSSG KPAEQTSKAP PEPPKQDYIH VRARRGQATD SHSLAERARR EKISERMKIL  180
QDLVPGCNKV IGKALVLDEI INYIQSLQRQ VEFLSMKLEA VNSRLTPGIE VFPPKDFDQQ  240
TFDTA
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Isoform 1 is specifically expressed in flowers, mostly in petals, inflorescence and flower buds. Isoform 2 is expressed ubiquitously (leaves, flowers and stems). {ECO:0000269|PubMed:16902407}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size. {ECO:0000269|PubMed:16902407}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1351570.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform 1 is up-regulated by PI/AP3, SEP2, SEP3 and AP1, but repressed by AG. {ECO:0000269|PubMed:16902407}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1466841e-107BT146684.1 Medicago truncatula clone JCVI-FLMt-9L20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028230344.11e-114transcription factor BHLH094-like
SwissprotQ0JXE71e-71BPE_ARATH; Transcription factor BPE
TrEMBLA0A445LYH71e-113A0A445LYH7_GLYSO; Transcription factor BHLH094 isoform A
STRINGGLYMA01G04610.31e-113(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.18e-77BIG PETAL P
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]