PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

bHLH

Protein Properties

Length: 245aa MW: 26457.4 Da PI: 7.1481

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj2g3v1351570.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.5	7.6e-11	161	208	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq Lj2g3v1351570.1 161 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 208 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.31E-10	155	212	No hit	No description
SuperFamily	SSF47459	6.54E-18	155	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.2E-18	157	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.828	157	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.3E-8	161	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-10	163	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048446	Biological Process	petal morphogenesis
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MDPAAMMNGG ANTASYHLAE IWQFPHPVAG DSGGGLGLRR PQFGHGFGDF TTCPTREDPG 60 SDPVSSDHRQ ALTVSLGRKR RDSEEESVKG VSTSNGGGNG NDGGGDGKRM KISGNRNESS 120 KGGEAEVSSG KPAEQTSKAP PEPPKQDYIH VRARRGQATD SHSLAERARR EKISERMKIL 180 QDLVPGCNKV IGKALVLDEI INYIQSLQRQ VEFLSMKLEA VNSRLTPGIE VFPPKDFDQQ 240 TFDTA

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Isoform 1 is specifically expressed in flowers, mostly in petals, inflorescence and flower buds. Isoform 2 is expressed ubiquitously (leaves, flowers and stems). {ECO:0000269\|PubMed:16902407}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size. {ECO:0000269\|PubMed:16902407}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00207	DAP	Transfer from AT1G59640	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj2g3v1351570.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Isoform 1 is up-regulated by PI/AP3, SEP2, SEP3 and AP1, but repressed by AG. {ECO:0000269\|PubMed:16902407}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT146684	1e-107	BT146684.1 Medicago truncatula clone JCVI-FLMt-9L20 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028230344.1	1e-114	transcription factor BHLH094-like
Swissprot	Q0JXE7	1e-71	BPE_ARATH; Transcription factor BPE
TrEMBL	A0A445LYH7	1e-113	A0A445LYH7_GLYSO; Transcription factor BHLH094 isoform A
STRING	GLYMA01G04610.3	1e-113	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1171	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59640.1	8e-77	BIG PETAL P

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]