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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Lj2g3v1278970.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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| Family |
NAC |
| Protein Properties |
Length: 165aa MW: 19326.2 Da PI: 9.8565 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lj2g3v1278970.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 172.8 | 1e-53 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94
l pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s
Lj2g3v1278970.1 15 LLPGFRFHPTDEELVGFYLKRKIQQRPLSI-ELIKQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYS 107
579***************************.89***************9888999*************************************** PP
NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
+ +++ +glkk+Lvfykgra kg+ktdW+mhe+rl
Lj2g3v1278970.1 108 SeGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 142
956677***************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 165 aa
Download sequence Send
to blast |
MEERNDHAEK LDEVLLPGFR FHPTDEELVG FYLKRKIQQR PLSIELIKQL DIYKYDPWDL 60
PKLASTGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSEG SKCIGLKKSL 120
VFYKGRAAKG VKTDWMMHEF RLPSLTDPMS QKKYIDKTIP ANVSN
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 5e-52 | 15 | 142 | 17 | 142 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 5e-52 | 15 | 142 | 17 | 142 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 5e-52 | 15 | 142 | 17 | 142 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 5e-52 | 15 | 142 | 17 | 142 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 5e-52 | 15 | 142 | 20 | 145 | NAC domain-containing protein 19 |
| 3swm_B | 5e-52 | 15 | 142 | 20 | 145 | NAC domain-containing protein 19 |
| 3swm_C | 5e-52 | 15 | 142 | 20 | 145 | NAC domain-containing protein 19 |
| 3swm_D | 5e-52 | 15 | 142 | 20 | 145 | NAC domain-containing protein 19 |
| 3swp_A | 5e-52 | 15 | 142 | 20 | 145 | NAC domain-containing protein 19 |
| 3swp_B | 5e-52 | 15 | 142 | 20 | 145 | NAC domain-containing protein 19 |
| 3swp_C | 5e-52 | 15 | 142 | 20 | 145 | NAC domain-containing protein 19 |
| 3swp_D | 5e-52 | 15 | 142 | 20 | 145 | NAC domain-containing protein 19 |
| 4dul_A | 5e-52 | 15 | 142 | 17 | 142 | NAC domain-containing protein 19 |
| 4dul_B | 5e-52 | 15 | 142 | 17 | 142 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269|PubMed:19081078}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269|PubMed:19081078}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EU661928 | 1e-179 | EU661928.1 Glycine max NAC domain protein (NAC36) mRNA, partial cds. |
