PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1277610.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NAC
Protein Properties Length: 283aa    MW: 32142.2 Da    PI: 7.233
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1277610.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.11.9e-5491341128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeel+v+yL+++v+++++++  +i+evdiyk++Pw+Lp k++ +ekewyfFs+r++ky++g r+nra+ sgyWkatg+dk+++s
  Lj2g3v1277610.1   9 LPPGFRFHPTDEELIVHYLCNQVSSHPCPA-PIIPEVDIYKFDPWELPDKTAFGEKEWYFFSPRERKYPNGARPNRAAVSGYWKATGTDKSIFS 101
                      79***************************9.88***************888889**************************************** PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++++vg+kk Lvfykg+ pkg+ktdW+mheyrl
  Lj2g3v1277610.1 102 -GSQHVGVKKALVFYKGKPPKGVKTDWIMHEYRL 134
                      .99*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-666161IPR003441NAC domain
PROSITE profilePS5100561.0259161IPR003441NAC domain
PfamPF023651.3E-2610134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MEGSSSSELP PGFRFHPTDE ELIVHYLCNQ VSSHPCPAPI IPEVDIYKFD PWELPDKTAF  60
GEKEWYFFSP RERKYPNGAR PNRAAVSGYW KATGTDKSIF SGSQHVGVKK ALVFYKGKPP  120
KGVKTDWIMH EYRLIGTTTQ PPRQIGSMRL DDWVLCRIYK KKATANSLEV KEEEYPTTPI  180
DLKRANEECE QKIDLKFPRT NSLANLLDVD YLGSISHILS DGSYNSTFDF QLNSAHGGTD  240
PLQLMEMPTN SSYAADSGKL QVKRNNTINP TIFVKQDYDH RGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-77916620173NAC domain-containing protein 19
3swm_B3e-77916620173NAC domain-containing protein 19
3swm_C3e-77916620173NAC domain-containing protein 19
3swm_D3e-77916620173NAC domain-containing protein 19
3swp_A3e-77916620173NAC domain-containing protein 19
3swp_B3e-77916620173NAC domain-containing protein 19
3swp_C3e-77916620173NAC domain-containing protein 19
3swp_D3e-77916620173NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.174640.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stem, flowers, and leaves. {ECO:0000269|PubMed:29760199}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1277610.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1384760.0BT138476.1 Lotus japonicus clone JCVI-FLLj-13K17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020236734.11e-157NAC domain-containing protein 2 isoform X2
SwissprotK4BNG71e-108NAP2_SOLLC; NAC domain-containing protein 2
TrEMBLI3SDC90.0I3SDC9_LOTJA; Uncharacterized protein
STRINGGLYMA01G06150.11e-155(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41033262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-107NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]