PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1200030.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 533aa    MW: 57313.1 Da    PI: 5.4623
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1200030.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.5e-09348396355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Lj2g3v1200030.2 348 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 396
                      58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.99E-11343400No hitNo description
SuperFamilySSF474596.8E-17343414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485345395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-16346412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-6348396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10351401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MSDKEKFELD RNEDPMSYST GVPSDWRFEG ANLANSSVGF VSRGDLIGSS SCSSASMVDS  60
FAPNFWEHHP TNSHNLGFCD INVHNNSGSS SNMSGIRKDG FEMGWNQGNT LLKGDGFLPN  120
GLFPQTLSQF PSDSGFIERA ARFSCFSGGN FGPMANSYEI PHPTGLYAGH GLQSAAGGQS  180
QECELNVLEA SKAVSPSVEH LATKGSPYKN DQRSESHGVS QDEGKQPLGR PANDSDRAES  240
SDDDGGSGGG QDDSPMLEGT SEEPSGKGLN SKKRKRIGQD ADNDKANGAS ELHSEGAKDN  300
SESQQKADKQ TTSAAKASGK NAKHGSQASD PAKEEYIHVR ARRGQATNSH SLAERVRREK  360
ISERMKFLQD LVPGCSKVTG KAVMLDEIIN YVQSLQRQVE FLSMKLATVN PRLDFNIEGL  420
LAKDILHQRP GPSSGLGFPL EMSMAFPSLH PSQPGLVQSI IPNMGNSSDI LRRAIHPQLA  480
APLSGGFKEP NQLPNVWEDE LHNVVQMSFA TTAPMSSQDV DGSVEASQMK VEP
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1200030.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027360346.10.0transcription factor bHLH49-like isoform X2
RefseqXP_027360347.10.0transcription factor bHLH49-like isoform X2
TrEMBLA0A0B2Q6P10.0A0A0B2Q6P1_GLYSO; Transcription factor bHLH49
TrEMBLK7K2A60.0K7K2A6_SOYBN; Uncharacterized protein
STRINGGLYMA01G09400.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-103bHLH family protein