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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Lj2g3v1091860.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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| Family |
TCP |
| Protein Properties |
Length: 309aa MW: 34306.8 Da PI: 8.6752 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lj2g3v1091860.1 | genome | Kazusa | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 94.5 | 2.2e-29 | 63 | 143 | 2 | 66 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................s 66
g+kdrhsk++T +g+RdRRvRls+++a+ ++dLqd+LG+ ++sk ++WLl++ak++i+el+ + +
Lj2g3v1091860.1 63 FGGKDRHSKVCTIRGLRDRRVRLSVPTAILLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLpippgnitlgypslvsP 143
689*************************************************************44444444444433330 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009965 | Biological Process | leaf morphogenesis |
| GO:0030154 | Biological Process | cell differentiation |
| GO:0031347 | Biological Process | regulation of defense response |
| GO:0045962 | Biological Process | positive regulation of development, heterochronic |
| GO:0009507 | Cellular Component | chloroplast |
| Sequence ? help Back to Top |
| Protein Sequence Length: 309 aa
Download sequence Send
to blast |
MTETIFKMNK RGPTEAADFP LKQEGLSSHD DDKVAKASAA SSSASSQWLK LKDPRIVRVS 60
RAFGGKDRHS KVCTIRGLRD RRVRLSVPTA ILLYDLQDRL GLNQPSKVVD WLLNAAKHEI 120
DELPPLPIPP GNITLGYPSL VSPNTTLWKS KPKEVVVTEK DNWVSRNEDE DVKQGSNEDV 180
LPNNVFPIRA NHPSFLGLLN TVHPLGYNQF EPSANVGHLA NLGFVNQGDI PSNINAVTFP 240
STLTLSTQPY FPSHVGAMEM DPRQINHYQM LSSSSQNLTI CDDLHSSQHL MSQSGKPFSF 300
VGKFNFKQN
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, buds, flowers and immature siliques, and, to a lower extent, in roots. {ECO:0000269|PubMed:11161017, ECO:0000269|PubMed:17307931}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Binds to the 3'-ACC-5' repeats in the light-responsive promoter (LRP) of psbD, and activates its transcription. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:11161017, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Yamburenko MV,Zubo YO,Börner T
Abscisic acid affects transcription of chloroplast genes via protein phosphatase 2C-dependent activation of nuclear genes: repression by guanosine-3'-5'-bisdiphosphate and activation by sigma factor 5.
Plant J., 2015. 82(6): p. 1030-41
[PMID:25976841] - Koyama T,Sato F,Ohme-Takagi M
Roles of miR319 and TCP Transcription Factors in Leaf Development.
Plant Physiol., 2017. 175(2): p. 874-885
[PMID:28842549]
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