PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1068540.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 167aa    MW: 19300.4 Da    PI: 5.7236
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1068540.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.85.1e-083252346
                     -HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46
                     +W++Ia +++ gRt++++k++w++
  Lj2g3v1068540.1  3 RWSLIAGRLP-GRTPNDVKNFWNT 25
                     4*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.142131IPR017930Myb domain
SuperFamilySSF466892.77E-6331IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-9327IPR009057Homeodomain-like
PfamPF002495.6E-6325IPR001005SANT/Myb domain
CDDcd001671.63E-5327No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MYRWSLIAGR LPGRTPNDVK NFWNTNVRKS KVSSRKEEIQ YAEPKETVKP HSVIKPQTRT  60
LSKPSPCSLR KWFPSKDQDG TTQCHITQPC AASTECNDNH NNNAKDKWLG TAIGDNGSNL  120
ENDKYFSGNQ DWTLMKDFNL DEELPTDFLI EDQSWSDFFL DINLWDL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1068540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003554899.15e-42transcription factor MYB114
RefseqXP_028216182.15e-42transcription factor MYB114-like
TrEMBLA0A445FBD41e-40A0A445FBD4_GLYSO; Transcription factor MYB113
TrEMBLK7MW481e-40K7MW48_SOYBN; Uncharacterized protein
STRINGGLYMA19G02980.22e-41(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1672278
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66390.13e-13myb domain protein 90