PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj2g3v1068420.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

NAC

Protein Properties

Length: 224aa MW: 25834.6 Da PI: 9.2649

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj2g3v1068420.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.4	1.9e-55	18	144	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppG+rFhPtdeel+++yL +kv ++++ + +i+e+d++k+ePwdLp ++k +e ewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ Lj2g3v1068420.1 18 LPPGYRFHPTDEELITHYLSQKVLDSNFCA-IAIAEADLNKCEPWDLPWMAKMGEGEWYFFCMRDRKYPTGLRTNRATSAGYWKATGKDKEIYR 110 79***********************888.78***********87788999********************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129 +++l+g+kktLvfykgrap+gek++Wvmheyrle Lj2g3v1068420.1 111 -GKTLIGMKKTLVFYKGRAPRGEKSNWVMHEYRLE 144 .999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-63	9	168	IPR003441	NAC domain
PROSITE profile	PS51005	58.054	18	168	IPR003441	NAC domain
Pfam	PF02365	3.9E-30	19	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MEAMVKNFSR EGQQKFKLPP GYRFHPTDEE LITHYLSQKV LDSNFCAIAI AEADLNKCEP 60 WDLPWMAKMG EGEWYFFCMR DRKYPTGLRT NRATSAGYWK ATGKDKEIYR GKTLIGMKKT 120 LVFYKGRAPR GEKSNWVMHE YRLEEDKQSV QNLPKPAMDW AICRVFEKGA HGKKMHVPFS 180 PFAKEVLLPP LMESSPYNSE TTKTAIGESS HHSHVTSFSD PNQT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	6e-53	15	174	17	174	NAC domain-containing protein 19
3swm_B	6e-53	15	174	17	174	NAC domain-containing protein 19
3swm_C	6e-53	15	174	17	174	NAC domain-containing protein 19
3swm_D	6e-53	15	174	17	174	NAC domain-containing protein 19
3swp_A	6e-53	15	174	17	174	NAC domain-containing protein 19
3swp_B	6e-53	15	174	17	174	NAC domain-containing protein 19
3swp_C	6e-53	15	174	17	174	NAC domain-containing protein 19
3swp_D	6e-53	15	174	17	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj2g3v1068420.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003618528.2	1e-113	NAC domain-containing protein 92
Swissprot	Q9FLJ2	4e-95	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	G7KKX5	1e-111	G7KKX5_MEDTR; NAC transcription factor-like protein
STRING	AES74746	1e-112	(Medicago truncatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	2e-97	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]