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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v1058070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB_related | ||||||||
Protein Properties | Length: 236aa MW: 26042.1 Da PI: 5.7633 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.2 | 1.4e-11 | 2 | 36 | 12 | 48 |
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++++ ++lG++ W++Ia++++ Rt++++k++w++yl Lj2g3v1058070.1 2 IIHLQALLGNR-WAAIAAYLP-QRTDNDIKNYWNTYL 36 5788899****.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.86 | 1 | 40 | IPR017930 | Myb domain |
CDD | cd00167 | 5.47E-8 | 1 | 36 | No hit | No description |
SMART | SM00717 | 0.0023 | 1 | 38 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-15 | 1 | 37 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.1E-10 | 2 | 36 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.49E-10 | 2 | 42 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MIIHLQALLG NRWAAIAAYL PQRTDNDIKN YWNTYLKKRL NKLQTGAADG TLGHAGFSPI 60 SRPMPRGQWE RRLQTDIHMA KKALSEALSP NNNTFTLLPE SNSTLSSESS FCSTKQTQSS 120 PCYASSADNI ARLLKGWMKK SPKGSCSKTL NDTDSTSEGY SIVAKGSNNC VELNETFESL 180 FGYNESLDSL NSESPEATLF QDESKPAGVG AEMPFSLLEQ WLLDDAGYQE KLSLLQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.25857 | 0.0 | floral bud |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v1058070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT137708 | 0.0 | BT137708.1 Lotus japonicus clone JCVI-FLLj-17B11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017438904.1 | 2e-97 | PREDICTED: transcription factor MYB30 | ||||
TrEMBL | I3SB61 | 1e-171 | I3SB61_LOTJA; Uncharacterized protein | ||||
STRING | XP_007151227.1 | 1e-94 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1016 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28910.1 | 4e-47 | myb domain protein 30 |