PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v1058060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB_related | ||||||||
Protein Properties | Length: 76aa MW: 8633.82 Da PI: 8.9966 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.9 | 2.8e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv +++++G+g+Wk++++ g+ R+ k+c++rw +yl Lj2g3v1058060.1 14 KGPWTPEEDITLVSYIQEHGPGNWKAVPANTGLSRCSKSCRLRWTNYL 61 79********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-26 | 5 | 72 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.47E-20 | 8 | 71 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.128 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 5.1E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-18 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.43E-12 | 16 | 61 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 76 aa Download sequence Send to blast |
MGRPPCCDKE GVKKGPWTPE EDITLVSYIQ EHGPGNWKAV PANTGLSRCS KSCRLRWTNY 60 LRPGIKRGNF TEQEEK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.25857 | 1e-127 | floral bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269|PubMed:1840903}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v1058060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT137708 | 1e-124 | BT137708.1 Lotus japonicus clone JCVI-FLLj-17B11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027359006.1 | 6e-50 | myb-related protein 306-like | ||||
Swissprot | P81392 | 4e-47 | MYB06_ANTMA; Myb-related protein 306 | ||||
TrEMBL | I3SB61 | 2e-49 | I3SB61_LOTJA; Uncharacterized protein | ||||
STRING | GLYMA13G05370.1 | 2e-48 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47600.1 | 1e-48 | myb domain protein 94 |
Publications ? help Back to Top | |||
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