PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1035930.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 92aa    MW: 10504.8 Da    PI: 8.5286
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1035930.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.52e-0722581854
                     HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                     +  ++Lr+l+P+ +   +s K+s + +L ++++YI+sL
  Lj2g3v1035930.1 22 ELVSKLRQLVPEiR-DRRSDKVSASKVLHETCNYIRSL 58
                     56689*******76.99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.347458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-81972IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-92077IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-52258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSSRRSRQQS SSTRISDDQI IELVSKLRQL VPEIRDRRSD KVSASKVLHE TCNYIRSLHR  60
EVDDLSERLS QLLASIDGDS PEAAIIRSLI NQ
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1035930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311282e-84KT031128.1 Glycine max clone HN_CCL_66 bHLH transcription factor (Glyma19g02510.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027359299.18e-55transcription factor PRE5
SwissprotQ9LJX12e-42PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A0K2CT675e-52A0A0K2CT67_SOYBN; BHLH transcription factor (Fragment)
TrEMBLA0A0S3T7L75e-52A0A0S3T7L7_PHAAN; Uncharacterized protein
TrEMBLA0A1S3UMB65e-52A0A1S3UMB6_VIGRR; transcription factor PRE5
TrEMBLA0A445HCA15e-52A0A445HCA1_GLYSO; Transcription factor PRE5
TrEMBLV7C1I45e-52V7C1I4_PHAVU; Uncharacterized protein
STRINGGLYMA13G05280.19e-53(Glycine max)
STRINGGLYMA19G02510.19e-53(Glycine max)
STRINGXP_007151219.19e-53(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.13e-34bHLH family protein