PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v1035930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 92aa MW: 10504.8 Da PI: 8.5286 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.5 | 2e-07 | 22 | 58 | 18 | 54 |
HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54 + ++Lr+l+P+ + +s K+s + +L ++++YI+sL Lj2g3v1035930.1 22 ELVSKLRQLVPEiR-DRRSDKVSASKVLHETCNYIRSL 58 56689*******76.99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.347 | 4 | 58 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.3E-8 | 19 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.84E-9 | 20 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.9E-5 | 22 | 58 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
MSSRRSRQQS SSTRISDDQI IELVSKLRQL VPEIRDRRSD KVSASKVLHE TCNYIRSLHR 60 EVDDLSERLS QLLASIDGDS PEAAIIRSLI NQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v1035930.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031128 | 2e-84 | KT031128.1 Glycine max clone HN_CCL_66 bHLH transcription factor (Glyma19g02510.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027359299.1 | 8e-55 | transcription factor PRE5 | ||||
Swissprot | Q9LJX1 | 2e-42 | PRE5_ARATH; Transcription factor PRE5 | ||||
TrEMBL | A0A0K2CT67 | 5e-52 | A0A0K2CT67_SOYBN; BHLH transcription factor (Fragment) | ||||
TrEMBL | A0A0S3T7L7 | 5e-52 | A0A0S3T7L7_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A1S3UMB6 | 5e-52 | A0A1S3UMB6_VIGRR; transcription factor PRE5 | ||||
TrEMBL | A0A445HCA1 | 5e-52 | A0A445HCA1_GLYSO; Transcription factor PRE5 | ||||
TrEMBL | V7C1I4 | 5e-52 | V7C1I4_PHAVU; Uncharacterized protein | ||||
STRING | GLYMA13G05280.1 | 9e-53 | (Glycine max) | ||||
STRING | GLYMA19G02510.1 | 9e-53 | (Glycine max) | ||||
STRING | XP_007151219.1 | 9e-53 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF567 | 34 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26945.1 | 3e-34 | bHLH family protein |