PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v0813500.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 336aa    MW: 36755.9 Da    PI: 6.5113
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v0813500.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.90.000431992371255
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Lj2g3v0813500.1 199 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 237
                      6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.503187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.19E-6197241No hitNo description
SuperFamilySSF474594.58E-10197248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-7201243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MNRGVLQSSP VQQMMAGNPN WWNININSMR PPSPQPQAPP FLPTPSNFLT PYPPSSSSSL  60
PFPSWPENQE VPESWSQLLM SGVVAEEDKG AMAQFQNQML TQAPNASFID VKQENSGNSY  120
VYGHGNEELH SAKSCWSPKS CVTSFSSNML DFSNNNRDHV RLHPPPDLSS ECNSTPASGG  180
AMKKARVQPS TSQPTFKVRK EKLGDRITAL HQLVSPFGKT DTASVLLEAI GYIRFLQSQI  240
EALSLPYLSS GSGSTRQQQQ QHVQGEKNSI FPEDPGQLLN ENGLKRKATE GQDSQEESKK  300
DLRSRGLCLV PVSCTLQVGS DNGADYWAPA FGGGFQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.51960.0floral bud| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v0813500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1450100.0BT145010.1 Lotus japonicus clone JCVI-FLLj-18O21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027357933.11e-177transcription factor bHLH68
SwissprotQ8S3D12e-92BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A0L9VRW21e-171A0A0L9VRW2_PHAAN; Uncharacterized protein
TrEMBLA0A0S3QX341e-171A0A0S3QX34_PHAAN; Uncharacterized protein
STRINGGLYMA05G35610.11e-166(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12233379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.13e-69bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]