PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v0621850.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 463aa    MW: 50452.5 Da    PI: 5.5762
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v0621850.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.6e-1658102147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+eE++++++a k++G g W+ I +++g  +t+ q++s+ qk+
  Lj2g3v0621850.2  58 REKWTEEEHQKFLEALKLYGRG-WRQIEEHIG-SKTAVQIRSHAQKF 102
                      789*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.68E-1652106IPR009057Homeodomain-like
PROSITE profilePS5129420.83153107IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.5E-1055106IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-1656105IPR006447Myb domain, plants
SMARTSM007177.3E-1357105IPR001005SANT/Myb domain
PfamPF002494.7E-1458101IPR001005SANT/Myb domain
CDDcd001675.38E-1160103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MEMKDQVEGP RSTIYGTASN FPSNGGTQSD NVAKLPDTPA GNSLAPKARK PYTITKQREK  60
WTEEEHQKFL EALKLYGRGW RQIEEHIGSK TAVQIRSHAQ KFFSKVVRES DGSAESSIQP  120
IAIPPPRPKR KPLHPYPRKS ADSFKGQTVP NEPEKSPSAN LSGGEKETQS PTSVLSAFGS  180
EAFGSAFSEQ TNRCLSPNSC TTDIHSMSLS PAEKDNDCMT SKPAEVEEKG SLASVNLTTG  240
LNPLMCMKSE IGAEETEGLK EDATNMPPIS SSIKLFGRTV SMVGNLMSMK VDDENIKPET  300
IEMDDVENVK VGQVGASEPL DTQLSLGLSC GKLTSIEHPK ENLCSSEDDP DSSLPSLSLY  360
QGLSAFNLRP CNHEILNPMP LRPCLKVRAR EEESSCTGSN TESVGKNSDT VDSKLQKYHE  420
DGVAPQKSGR GFVPYKRCLA ERDANSLIVG LEEREGQRAR LCS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.57610.0cell culture| flower
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v0621850.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150446e-39AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548314.10.0protein REVEILLE 7
RefseqXP_014624432.10.0protein REVEILLE 7
RefseqXP_028207255.10.0protein REVEILLE 7-like
RefseqXP_028207256.10.0protein REVEILLE 7-like
TrEMBLA0A371HX550.0A0A371HX55_MUCPR; Protein REVEILLE 7 (Fragment)
TrEMBLA0A445GLJ10.0A0A445GLJ1_GLYSO; Protein REVEILLE 7 isoform A
TrEMBLI1MQL70.0I1MQL7_SOYBN; Uncharacterized protein
STRINGGLYMA16G34340.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73133244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.11e-53MYB_related family protein