PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v0473830.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 228aa MW: 26536.2 Da PI: 7.852 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40 | 6.9e-13 | 61 | 110 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h e+Er+RR+++ s ++ Lr+llP + ++K s +e +A +YIk++q Lj2g3v0473830.1 61 VHREIERKRRQDMASFYASLRSLLPLEF--IKGKRSLSEHINEAANYIKHMQ 110 69************************65..*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.93E-13 | 55 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.40E-9 | 55 | 114 | No hit | No description |
PROSITE profile | PS50888 | 12.703 | 57 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.8E-10 | 61 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.0E-10 | 61 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.9E-5 | 63 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MFPLQRGNEL VIKFSSSPHQ QQHKIPEDLI LDEMITSSQP REQFFRAEMS KDHHKSKKIM 60 VHREIERKRR QDMASFYASL RSLLPLEFIK GKRSLSEHIN EAANYIKHMQ NNLKELGAKR 120 DELKKLSHNF MLENHESNNT TNNFTVHENN GILGIEITSD FKEESLKLSK LLHLLHEEGH 180 DVVNWFSTEL DGRLVYSVQC KVNNSNSLDL SELKRKVANA IPTFICSD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 65 | 70 | ERKRRQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.2140 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v0473830.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003548234.1 | 1e-107 | transcription factor bHLH118 | ||||
Refseq | XP_028206682.1 | 1e-107 | transcription factor bHLH118-like | ||||
TrEMBL | A0A0B2RHW1 | 1e-106 | A0A0B2RHW1_GLYSO; Transcription factor bHLH126 | ||||
TrEMBL | I1MQ59 | 1e-106 | I1MQ59_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA16G32620.1 | 1e-106 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF792 | 33 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51780.1 | 7e-35 | bHLH family protein |