PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

Nin-like

Protein Properties

Length: 682aa MW: 76162.6 Da PI: 6.3705

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj2g3v0381780.2	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	88.1	7.3e-28	570	621	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yFs+++kdAAk+Lgvc+T++KriCR +GI+RWP+Rkik++ Lj2g3v0381780.2 570 AEKSISLEVLQRYFSGSLKDAAKSLGVCPTTMKRICRLNGISRWPSRKIKKV 621 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.972	558	641	IPR003035	RWP-RK domain
Pfam	PF02042	1.6E-24	574	621	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 682 aa Download sequence Send to blast
MPESEEENPD LPLKSKPMEE HGFPMDFDND LESSWPFDHV SCLSNPMSPF LLSNISEQPF 60 SPLWAFSDVE DDKHVSITAS DTVTENPVEN DDSKKHMTPL VPMPPLENRD GFCLIKERMT 120 QALRHFKELT EQNVLAQVWV PVRNGNKYKL TTSGQPFVLD PHSNGLHQYR TVSLMYMFSV 180 DGENDEILGL PGRVFQQKLP EWTPNVQYYS SKEYSRLNHA QHYNVRGTLA LPVFEPSGQS 240 CVAVMELIMT AQKVNYAPEV DKVCKALEAV NLRSSEILEH PYSQNCNEGR KNALAEILEI 300 LTLVCETHNL PLAQTWVPCR YRSVLAHGGG LKKSCSSFDG YCMGQVCMSI TEVAYYIIDS 360 HTWGFHEACV EHHLQQGQGV AGRAFLSQNM CFCGNITQFC KTDYPLVHYA LMFGLTSSFA 420 ICLQSSHTGN DDYVLEFFLP PRITEFNEQK ALLGSILATM KQHFQSLKIA SGVELEEDGS 480 VEIVETINER VHMRLESVPI IQSDKSPPRH DGSASPNLRH GVPLDPLEQQ TMLDGINDGG 540 SLGDSGGGSM EKISSLEIKN KTSQRKRGKA EKSISLEVLQ RYFSGSLKDA AKSLGVCPTT 600 MKRICRLNGI SRWPSRKIKK VNSSLSKLKC VMESVHGAEG AFGLNSPSSS LPIASAEPCT 660 SKKLDHQAPL RIRPSESRMN WK

Sequence ? help Back to Top

Protein Sequence Length: 682 aa Download sequence Send to blast

MPESEEENPD LPLKSKPMEE HGFPMDFDND LESSWPFDHV SCLSNPMSPF LLSNISEQPF  60
SPLWAFSDVE DDKHVSITAS DTVTENPVEN DDSKKHMTPL VPMPPLENRD GFCLIKERMT  120
QALRHFKELT EQNVLAQVWV PVRNGNKYKL TTSGQPFVLD PHSNGLHQYR TVSLMYMFSV  180
DGENDEILGL PGRVFQQKLP EWTPNVQYYS SKEYSRLNHA QHYNVRGTLA LPVFEPSGQS  240
CVAVMELIMT AQKVNYAPEV DKVCKALEAV NLRSSEILEH PYSQNCNEGR KNALAEILEI  300
LTLVCETHNL PLAQTWVPCR YRSVLAHGGG LKKSCSSFDG YCMGQVCMSI TEVAYYIIDS  360
HTWGFHEACV EHHLQQGQGV AGRAFLSQNM CFCGNITQFC KTDYPLVHYA LMFGLTSSFA  420
ICLQSSHTGN DDYVLEFFLP PRITEFNEQK ALLGSILATM KQHFQSLKIA SGVELEEDGS  480
VEIVETINER VHMRLESVPI IQSDKSPPRH DGSASPNLRH GVPLDPLEQQ TMLDGINDGG  540
SLGDSGGGSM EKISSLEIKN KTSQRKRGKA EKSISLEVLQ RYFSGSLKDA AKSLGVCPTT  600
MKRICRLNGI SRWPSRKIKK VNSSLSKLKC VMESVHGAEG AFGLNSPSSS LPIASAEPCT  660
SKKLDHQAPL RIRPSESRMN WK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj2g3v0381780.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020221300.1	0.0	protein NLP6
Swissprot	Q8RWY4	0.0	NLP6_ARATH; Protein NLP6
TrEMBL	A0A371HQW8	0.0	A0A371HQW8_MUCPR; Protein NLP7 (Fragment)
STRING	GLYMA09G25230.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Publications ? help Back to Top
Liseron-Monfils C, et al. Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs. Plant Signal Behav, 2014. [PMID:24270626] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968]