PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v0342790.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 653aa    MW: 71787.5 Da    PI: 6.75
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v0342790.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS315.51.2e-962836532374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      +++L+e+A a+++g++ +a+++L+rl   ++p+g++ qRl+ +++ AL++r++        a +p + +e  s e++ +++l+ e sP++k++ 
  Lj2g3v0342790.1 283 KQTLMEAASAIAEGKNDAASEILTRL---VNPTGNSDQRLTDCMVLALKSRMSA-------AENPPPVAELFSREHAESTQLLLENSPCFKVGL 366
                      689*******************9987...79**********************9.......334444444559999****************** PP

             GRAS  96 ltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl. 181
                      ++aN  Ilea+ +e    +   ++Df+i+qG Q+ +Ll+aL++R    + pp ++i +v++  sg +e+++++ge L++ Ae+l++ fef+v+ 
  Lj2g3v0342790.1 367 MAANLVILEAAFEEnvngKGFCVVDFEIGQGKQYFTLLHALSTRGqngKVPPPMKIAAVAE--SGGEERVRAVGEMLSRQAERLRIGFEFRVVs 458
                      *********876665777778***********************96544599*********..77***************************97 PP

             GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                      v ++l+dl+ e+L ++++E+l+Vnl+++l r++desvs+e++rde+L+ vk+l P+vv+v eqe++ n+++Fl+r++e+ +yysalfds+e+ +
  Lj2g3v0342790.1 459 VPNKLADLTRESLGCDSEETLVVNLAFKLNRIPDESVSTENPRDELLRRVKKLAPRVVTVLEQEVNANTAPFLARVAESWSYYSALFDSVESAM 552
                      778******************************************************************************************* PP

             GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk...sdgyrveeesgslvlgWkdrp 366
                      ++e+ +r+kvE+  l+r+++n vaceg++r+er+e ++kWr+r+++aG +  pls++ a+++++ l+  +   + g +v+ee+g +++gW++r+
  Lj2g3v0342790.1 553 GKENPDRVKVEEG-LSRKLCNSVACEGRDRVERCEVFGKWRARMSMAGVQLKPLSQNLAESINSRLAAGNnrvNPGLTVKEENGGICFGWMGRT 645
                      *************.*********************************************99988876543236689****************** PP

             GRAS 367 LvsvSaWr 374
                      L+++SaWr
  Lj2g3v0342790.1 646 LTVASAWR 653
                      *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.122256630IPR005202Transcription factor GRAS
PfamPF035144.1E-94283653IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MSSGFTGGGG GAPEFFTGRS TINNLTTTVP ITNNLHHHSL YRTQQQQQQH HQSSPIFLDP  60
SSQFIQRQTP TITTTTFTGK RTLAEFQTQH HQNQIFNNNN SNSNSNSNFT HNQFLSNLLL  120
RSVKPRTTMF PHMDFSVPSQ LQNPNNLAFQ TQRLGVPLLH QLRPQPINLP DQNFPYRNSN  180
LGLHRVQNQS QTDDEPEKKI MNHQLLELEK QLLEDNDEGE EPDAASVITT SEWSETYQNL  240
IGLVSGSGSG SGLTQKPASS SPTSSTTSST SSSAASPASV CSKQTLMEAA SAIAEGKNDA  300
ASEILTRLVN PTGNSDQRLT DCMVLALKSR MSAAENPPPV AELFSREHAE STQLLLENSP  360
CFKVGLMAAN LVILEAAFEE NVNGKGFCVV DFEIGQGKQY FTLLHALSTR GQNGKVPPPM  420
KIAAVAESGG EERVRAVGEM LSRQAERLRI GFEFRVVSVP NKLADLTRES LGCDSEETLV  480
VNLAFKLNRI PDESVSTENP RDELLRRVKK LAPRVVTVLE QEVNANTAPF LARVAESWSY  540
YSALFDSVES AMGKENPDRV KVEEGLSRKL CNSVACEGRD RVERCEVFGK WRARMSMAGV  600
QLKPLSQNLA ESINSRLAAG NNRVNPGLTV KEENGGICFG WMGRTLTVAS AWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-292846536375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.123680.0cell culture| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v0342790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1356975e-65BT135697.1 Lotus japonicus clone JCVI-FLLj-6O13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027358196.10.0scarecrow-like protein 8
SwissprotQ9FYR71e-152SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A1S2Z0G20.0A0A1S2Z0G2_CICAR; scarecrow-like protein 8
STRINGXP_004512836.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62663151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-146SCARECROW-like 8