PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj2g3v0093580.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

Protein Properties

Length: 95aa MW: 11047.9 Da PI: 10.7159

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj2g3v0093580.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	46.4	6.9e-15	2	48	37	87
EEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 37 tledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +l+ +gr+W vk+ r++ +++GWk+F+++n+Lk+gD++vF+l+++ Lj2g3v0093580.1 2 ILYVIDGRTWHVKYLLRRGT----ISAGWKKFASDNNLKVGDVCVFELTKN 48 567789******766665....99*******************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd10017	6.80E-15	1	49	No hit	No description
SuperFamily	SSF101936	7.46E-15	1	51	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	13.126	1	59	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	7.6E-14	2	51	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.2E-11	2	48	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 95 aa Download sequence Send to blast
MILYVIDGRT WHVKYLLRRG TISAGWKKFA SDNNLKVGDV CVFELTKNNL FLSKYQSFHL 60 GENHINLIPL HHKVGRQLRK ELMNSPQKTP ISQSK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj2g3v0093580.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2N9JCA9	1e-13	A0A2N9JCA9_FAGSY; Uncharacterized protein
STRING	AET05311	5e-14	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16088	5	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	3e-09	B3 family protein