PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v0044780.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 355aa    MW: 40210 Da    PI: 8.204
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v0044780.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.42.7e-18223313498
                      E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      vl ps+  + ++++lp  fae++ +g++     ++l+  +gr+W v++ yr+++    l++GW eF  +n+L egD++vF+l ++++  l v++
  Lj2g3v0044780.1 223 VLRPSYLYRGCIMYLPSCFAEKNlNGVSG---FIKLQVADGRQWPVRCLYRGGR--AKLSQGWFEFTLENNLGEGDVCVFELLRTRDVVLQVTL 311
                      78899******************876743...599*************665555..66***********************9999888899998 PP

                      E- CS
               B3  97 fr 98 
                      fr
  Lj2g3v0044780.1 312 FR 313
                      87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-24212314IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-24213314IPR015300DNA-binding pseudobarrel domain
CDDcd100175.05E-23218313No hitNo description
SMARTSM010198.2E-19220315IPR003340B3 DNA binding domain
PROSITE profilePS5086313.93220315IPR003340B3 DNA binding domain
PfamPF023622.0E-16223313IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MYEGNSSFIV HIFNMSTSEV NYQSAVRSRN EGPVFTNYHH IFVEMEDTDS FEFMDSSPSN  60
LTPGSLQNKV FGGSVDQLTP GKNQSPARQN LFNGGSKLNR VNWGDSGSPF PSKDANSQGN  120
HSTRDIGVQF NAVEFKRSTE ELKLRYPNNE EGVSKTVKRK RKSEPKTVDG QEPSAENEEE  180
AEMRYRFYES ASARKRTVTA EERERAINDA KAFEPANPFC RVVLRPSYLY RGCIMYLPSC  240
FAEKNLNGVS GFIKLQVADG RQWPVRCLYR GGRAKLSQGW FEFTLENNLG EGDVCVFELL  300
RTRDVVLQVT LFRLTEEVGL LEAPPMQQPS PNVSHSKLLN PHLQHRVSTT KMVRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A6e-7518631815146B3 domain-containing transcription factor VRN1
4i1k_B6e-7518631815146B3 domain-containing transcription factor VRN1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.52970.0cell culture| floral bud| pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v0044780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1441300.0BT144130.1 Lotus japonicus clone JCVI-FLLj-16J9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498177.10.0B3 domain-containing transcription factor VRN1-like
RefseqXP_027361305.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A1S2Y2520.0A0A1S2Y252_CICAR; B3 domain-containing transcription factor VRN1-like
STRINGXP_004498177.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-81B3 family protein