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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Lj1g3v5038170.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
| Family |
Dof |
| Protein Properties |
Length: 260aa MW: 28490.9 Da PI: 8.8113 |
| Description |
Dof family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lj1g3v5038170.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-Dof | 125.8 | 1.3e-39 | 24 | 82 | 2 | 60 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
++++++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+
Lj1g3v5038170.1 24 PQEQVNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKR 82
7899*****************************************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 260 aa
Download sequence Send
to blast |
MEAGLAPNSC TTRGVLEKKT RPQPQEQVNC PRCNSTNTKF CYYNNYSLTQ PRYFCKTCRR 60
YWTEGGSLRN VPVGGGSRKN KRIITSASPK VIPDLNPPIP NASLNKVQQV GHDLNLAFPA 120
MGNYHHGHGM SSPYVEMGHD TSNYHSSSSC STAPIDLLRS GLVGSRGLNN PYVVMPMSSN 180
SLYPASGTGF PMQEMKPSLG LGFSLDGLEN RSYDEIQQNG GGSGRLLFPF GGDTKQVEVE 240
HSNKEQGNKS TAYWTGINDW
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos. |
| Uniprot | TISSUE SPECIFICITY: Expressed in the phloem of the mother plant, including in roots, stem, leaves and flowers, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT136873 | 5e-66 | BT136873.1 Lotus japonicus clone JCVI-FLLj-14C11 unknown mRNA. |
| GenBank | BT144333 | 5e-66 | BT144333.1 Lotus japonicus clone JCVI-FLLj-13E12 unknown mRNA. |
| GenBank | DQ857267 | 5e-66 | DQ857267.1 Glycine max Dof17 mRNA, complete cds. |
| GenBank | KP662910 | 5e-66 | KP662910.1 Cajanus cajan Dof5 (Dof5) gene, partial cds. |
