PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v5035080.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ARF
Protein Properties Length: 683aa    MW: 76593.1 Da    PI: 6.3965
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v5035080.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.83.7e-22133233198
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+lt sd++++g +++ +++a+e+       + ++++  +l  +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   + 
  Lj1g3v5035080.1 133 FSKILTASDTSTHGGFSVLRRHATEClpqldmtQAIPTQ--ELAAKDLHGFEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RG 222
                      889*************************99977555555..8************************************************..34 PP

                      SEE..EEEEE- CS
               B3  88 sefelvvkvfr 98 
                      +++ l+v+v+r
  Lj1g3v5035080.1 223 ENGDLRVGVRR 233
                      88889***998 PP
2Auxin_resp1003.3e-33259338183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+ha+ t ++F v+Y+Pr+  s+F++ v+k+++al++k+svGmRfkm+fe eds+err+sGt+v+v d++p  W+nS+WrsLk
  Lj1g3v5035080.1 259 ASHAVLTCTMFVVYYKPRT--SQFIIGVNKYLEALTNKFSVGMRFKMRFEVEDSPERRFSGTIVDVGDVSP-GWSNSQWRSLK 338
                      6799999***********6..9*************************************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.84E-39124262IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-38125248IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-18131233No hitNo description
PROSITE profilePS5086311.758133235IPR003340B3 DNA binding domain
SMARTSM010198.5E-20133235IPR003340B3 DNA binding domain
PfamPF023624.5E-20133233IPR003340B3 DNA binding domain
PfamPF065074.4E-30259338IPR010525Auxin response factor
PfamPF023093.2E-6571610IPR033389AUX/IAA domain
SuperFamilySSF542773.83E-10573652No hitNo description
PROSITE profilePS5174520.38574655IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MAHLKGAHLR GTTEETGLGD DDQLDTELWK LCAGPLVDVP RSGERVFYFP QGHMEQLQAS  60
TNQEGNLDLN QQFPHFNLPS KILCRVVHIQ LLAEQESDEV YARITLIPES NQSEPTCPDS  120
TQPETQKHKF HSFSKILTAS DTSTHGGFSV LRRHATECLP QLDMTQAIPT QELAAKDLHG  180
FEWKFKHIFR GQPRRHLLTT GWSTFVTSKR LVAGDAFVFL RGENGDLRVG VRRLARQQSP  240
MPSSVISSQS MHLGVLATAS HAVLTCTMFV VYYKPRTSQF IIGVNKYLEA LTNKFSVGMR  300
FKMRFEVEDS PERRFSGTIV DVGDVSPGWS NSQWRSLKVQ WDEPASIPRP ERVSSWEIEP  360
FVASTTSNVT EPLVKSKRTR PPEVSSSEIA LNSPFSTFWY HGPSLSHEPT QLGGAAEPEN  420
NENRVVRSLK GQREINGNPH LNLSSNFINP EPKNNKDVAA LSSACGYYPV SSRPNDGSAH  480
DQVESGKKTE NSMDCWVFGV NLTTTFPNVD KELGCQVIIP SGPNDPLPIA ACETETEGGH  540
NPNYSVSNKE QKQIISDASL NERQNKQVSI PSLRTRTKVQ MQGIAVGRAV DLTMLKDYDD  600
LIDELEKLFD IKGELRVQNK WNIAFTDYAN DMMLVGDHPW QEFCTIVKRI SIYAREDVKM  660
KCKHSGSWSE CEETLLSQDS QTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1662236117355Auxin response factor 1
4ldw_A1e-1662236117355Auxin response factor 1
4ldw_B1e-1662236117355Auxin response factor 1
4ldx_A1e-1662236117355Auxin response factor 1
4ldx_B1e-1662236117355Auxin response factor 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v5035080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027350981.10.0auxin response factor 18-like isoform X1
RefseqXP_027350982.10.0auxin response factor 18-like isoform X1
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A371H9820.0A0A371H982_MUCPR; Auxin response factor (Fragment)
STRINGXP_007147325.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9