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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Lj1g3v5020820.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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| Family |
Whirly |
| Protein Properties |
Length: 235aa MW: 26062.9 Da PI: 9.7127 |
| Description |
Whirly family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lj1g3v5020820.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Whirly | 202 | 7.3e-63 | 57 | 192 | 2 | 137 |
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95
vyk+kaa+++ +v+ptf++ldsg+l+++r+G++++ +++a++erkydWek+q+falsatev++l+ +++++sceffhdp++ +sn+G+vrk+l+
Lj1g3v5020820.1 57 VYKGKAAMSLSPVLPTFTKLDSGALVVERRGSIMMVFTPAIGERKYDWEKRQKFALSATEVGSLIAMGPQDSCEFFHDPSMSSSNAGQVRKSLS 150
8********************************************************************************************* PP
Whirly 96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
++P+++ sG+fv+l+v n+l++++e+f vPv+ aefav++++
Lj1g3v5020820.1 151 IKPHANSSGYFVSLTVVNNLLNAKENFNVPVTTAEFAVMKTA 192
****************************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 235 aa
Download sequence Send
to blast |
MLKLLRVLPS TSRNWVLEME VLSSSRNPQV RDFSTAARET YVAKGYTTDR VFAPYYVYKG 60
KAAMSLSPVL PTFTKLDSGA LVVERRGSIM MVFTPAIGER KYDWEKRQKF ALSATEVGSL 120
IAMGPQDSCE FFHDPSMSSS NAGQVRKSLS IKPHANSSGY FVSLTVVNNL LNAKENFNVP 180
VTTAEFAVMK TACSFALPHI MGWDRLTNQQ SSLPGGTVGL QSKVDKPVFD LEWDK
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4kop_A | 2e-86 | 48 | 209 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_B | 2e-86 | 48 | 209 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_C | 2e-86 | 48 | 209 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_D | 2e-86 | 48 | 209 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Single-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo. {ECO:0000269|PubMed:18423020, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:22762281}. |
