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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Lj1g3v4914260.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
| Family |
C2H2 |
| Protein Properties |
Length: 185aa MW: 21402.3 Da PI: 9.8412 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lj1g3v4914260.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 15.8 | 3.9e-05 | 8 | 28 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C++C+k F r nL+ H r H
Lj1g3v4914260.1 8 CEICNKGFQRDQNLQLHRRGH 28
*******************88 PP
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| 2 | zf-C2H2 | 18 | 7.8e-06 | 82 | 104 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC +C+k++ +s+ k H++t+
Lj1g3v4914260.1 82 WKCDKCSKRYAVQSDWKAHQKTC 104
58*******************98 PP
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| 3 | zf-C2H2 | 11.2 | 0.0011 | 112 | 130 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS
zf-C2H2 5 dCgksFsrksnLkrHirtH 23
dCg+ Fsr++++ +H +
Lj1g3v4914260.1 112 DCGTIFSRRDSFITHRAFC 130
8**************8765 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 185 aa
Download sequence Send
to blast |
MATNRFLCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRTSN EVKKRVYVCP EPSCVHHNPA 60
RALGDLTGIK KHYSRKHGEK KWKCDKCSKR YAVQSDWKAH QKTCGTREYK CDCGTIFSRR 120
DSFITHRAFC DALTEENNRV NQGLTSGMPQ NMQSQMPDLM STMPLRGTSS NTASEFNDYD 180
PKTSL
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in the ground tissue and stele cells of embryos and 2-days post-germination roots but not in the quiescent center (PubMed:17785527). Detected only in cells that perform asymmetric cell divisions (PubMed:17785527). In roots, present in cortex, endodermis, and pericycle layer (PubMed:25829440). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:25829440}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC235349 | 1e-136 | AC235349.1 Glycine max strain Williams 82 clone GM_WBb0092H01, complete sequence. |
| GenBank | HQ840770 | 1e-136 | HQ840770.1 Phaseolus vulgaris clone BAC B1-157 genotype G19833, complete sequence. |
