PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj1g3v4831860.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

MYB_related

Protein Properties

Length: 287aa MW: 32464.8 Da PI: 6.9692

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v4831860.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22	3.9e-07	128	169	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+eE + l d+++++ + + Ia +++ Rt +++k+r+++ Lj1g3v4831860.1 128 WTKEETDELFDLCERFDLR-FIVIADRFPSSRTVEELKDRYYS 169 *****************.*******************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF16282	2.7E-31	100	174	IPR032563	DAMP1, SANT/Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.9E-6	122	172	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.06E-6	123	173	IPR009057	Homeodomain-like
SMART	SM00717	6.1E-6	124	173	IPR001005	SANT/Myb domain
CDD	cd11658	9.33E-19	128	170	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MDAKDILGLT RHSFSLEKKP RPPKESQRKP DGISREVYAL TGGLPSLMPA IDSSQFKKKP 60 PPDEKITWQW LPFTSSARKD NLQLYHWVRV VNGVPPTGDY SFAKYNKSVD IIRYTDEEYD 120 KHLTNPMWTK EETDELFDLC ERFDLRFIVI ADRFPSSRTV EELKDRYYSV SRAILIARAP 180 SAGDVATHPV VKQPYKVSQE VERKRALSVV LSQTRQQERR DEEVIIEAKK ISELRVSSKV 240 AEESQLAVTS NAGAEFSEGV VPGDIVSPLN VPSTSPDNAS ILASLAW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3hm5_A	4e-20	99	184	4	93	DNA methyltransferase 1-associated protein 1
4iej_A	4e-20	99	184	4	93	DNA methyltransferase 1-associated protein 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.7298	0.0	floral bud\| pod\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305\|Ref.5}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v4831860.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027361164.1	1e-168	SWR1-complex protein 4-like isoform X2
Refseq	XP_027361165.1	1e-169	SWR1-complex protein 4-like isoform X3
Refseq	XP_027361166.1	1e-169	SWR1-complex protein 4-like isoform X4
Swissprot	Q8VZL6	1e-132	SWC4_ARATH; SWR1-complex protein 4
TrEMBL	A0A4P1QV07	1e-167	A0A4P1QV07_LUPAN; Uncharacterized protein
STRING	GLYMA19G40630.1	1e-167	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4975	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47210.1	1e-135	MYB_related family protein

Publications ? help Back to Top
Gómez-Zambrano Á, et al. Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes. Mol Plant, 2018. 11(6): p. 815-832 [PMID:29604400]