PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4830130.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 470aa    MW: 52124.7 Da    PI: 8.906
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4830130.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.66e-15315359554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      hn  Er+RRd+iN+++ +L+el+P++      K +Ka++L  A++Y+k L
  Lj1g3v4830130.1 315 HNLSERKRRDKINKKIRTLKELIPNC-----NKIDKASMLDDAIDYLKTL 359
                      9************************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.88E-17307364No hitNo description
SuperFamilySSF474591.96E-19309371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.631310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-18314368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-12315359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-17316365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0010017Biological Processred or far-red light signaling pathway
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MTEKILDSIY GNDFFELVWE NGQLGSSNRT TPKTPNNLCI GFSHQSNIGQ GSSQIHDLQL  60
QSPQSKSSCK KPIDEFRNLR PMKDCTYSSQ QCLPYSAPLK KPRMDSSLTP LTNSQKQNFS  120
NFLIPEVFLK STNHHRKSAT QTTRIALSPR VKEIEHSKVE KSTSSKGATD NSTVIESAKG  180
SHVLTGFRGQ RFLTTNKWNT KSIVEGSAAA PPPLDEHSEA VSHSNSSNGT TQYEALAKGK  240
AKNDNLCNER AIASSSVCSI EASYNPNFGS RKHDQDSDDS AFLSDDDEET EDYTVKEVQA  300
RDGTRIKRRR SAEIHNLSER KRRDKINKKI RTLKELIPNC NKIDKASMLD DAIDYLKTLK  360
HQLQIMSMGR GLCMPLMMPP HLPQLMGVGM GGIPCNPPQF SIPSLPGFTD NRLQMFGFSN  420
QQIPNMSIPN TPFFPIIGNS SSTQQPFIAA AEPLPYSAPL TTLEASNPKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1307322RRRSAEIHNLSERKRR
2318323ERKRRD
3319324RKRRDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4830130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0049670.0AP004967.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT27L02, TM0144, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027351537.11e-120transcription factor PIF3-like isoform X1
TrEMBLA0A151TXB81e-110A0A151TXB8_CAJCA; Transcription factor PIF3
STRINGXP_007163252.11e-102(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133291829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-21phytochrome interacting factor 3