PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v4752710.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | NF-YA | ||||||||
Protein Properties | Length: 178aa MW: 19376.8 Da PI: 10.6916 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 97.9 | 1e-30 | 11 | 66 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p+YVNaKQy++I++RRq+Rak+ ++k+ +k rkpylheSRh hAlrRpRg+gGrF Lj1g3v4752710.2 11 GPIYVNAKQYHGIIRRRQSRAKAVLDRKM-TKRRKPYLHESRHLHALRRPRGCGGRF 66 69**************************9.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.5E-34 | 8 | 69 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 35.654 | 9 | 69 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.3E-26 | 12 | 66 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.3E-23 | 12 | 34 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.3E-23 | 43 | 66 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MLPLNLTTDE GPIYVNAKQY HGIIRRRQSR AKAVLDRKMT KRRKPYLHES RHLHALRRPR 60 GCGGRFLNTK VSANGNGKTG RDVKKTGGEQ LQSSGSQGSD VFQSEVGTLN SSKETNGSSP 120 NVSGLEVTSM YSRGGFDTFS FNHLGSSVYP LADMVDCGRG IMPTKWVAAG GNSCNLNT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-18 | 10 | 70 | 2 | 62 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 24 | 43 | RRRQSRAKAVLDRKMTKRRK |
2 | 24 | 44 | RRRQSRAKAVLDRKMTKRRKP |
3 | 25 | 44 | RRQSRAKAVLDRKMTKRRKP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.17443 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v4752710.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB378628 | 0.0 | AB378628.1 Lotus japonicus CBF-A22 mRNA for transcription factor CCAAT, complete cds. | |||
GenBank | BT137657 | 0.0 | BT137657.1 Lotus japonicus clone JCVI-FLLj-2D9 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004494259.1 | 2e-97 | nuclear transcription factor Y subunit A-10-like | ||||
Refseq | XP_027188900.1 | 2e-97 | nuclear transcription factor Y subunit A-10-like | ||||
Swissprot | Q9M9X4 | 1e-41 | NFYA2_ARATH; Nuclear transcription factor Y subunit A-2 | ||||
TrEMBL | I3SB10 | 1e-127 | I3SB10_LOTJA; Uncharacterized protein | ||||
STRING | XP_004494259.1 | 6e-97 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05690.1 | 2e-39 | nuclear factor Y, subunit A2 |
Publications ? help Back to Top | |||
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