PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

NF-YA

Protein Properties

Length: 328aa MW: 35629.1 Da PI: 9.7362

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v4752710.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	96.4	3.1e-30	161	216	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p+YVNaKQy++I++RRq+Rak+ ++k+ +k rkpylheSRh hAlrRpRg+gGrF Lj1g3v4752710.1 161 GPIYVNAKQYHGIIRRRQSRAKAVLDRKM-TKRRKPYLHESRHLHALRRPRGCGGRF 216 69************************9.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.5E-34	158	219	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.654	159	219	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	6.6E-26	162	216	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	7.4E-23	162	184	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	7.4E-23	193	216	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MAMQTANLIE HEGIAHNFVG QLSSATSAPW WSAFGSQAVY GESCGQMKPF SLEPPISVDQ 60 LAAGKQSARG AEQVLAKGHT TQFTIFPDDC KVLGNAQKPQ TTISLQSSPT DTHSRFELGF 120 SQPMICAKYP YTDQFYGLFS TYGPQISGRI MLPLNLTTDE GPIYVNAKQY HGIIRRRQSR 180 AKAVLDRKMT KRRKPYLHES RHLHALRRPR GCGGRFLNTK VSANGNGKTG RDVKKTGGEQ 240 LQSSGSQGSD VFQSEVGTLN SSKETNGSSP NVSGLEVTSM YSRGGFDTFS FNHLGSSVYP 300 LADMVDCGRG IMPTKWVAAG GNSCNLNT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-17	160	220	2	62	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
4g91_A	1e-17	160	217	2	60	HAPB protein
4g92_A	1e-17	160	217	2	60	HAPB protein
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	174	193	RRRQSRAKAVLDRKMTKRRK
2	174	194	RRRQSRAKAVLDRKMTKRRKP
3	175	194	RRQSRAKAVLDRKMTKRRKP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.17443	0.0	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v4752710.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB378628	0.0	AB378628.1 Lotus japonicus CBF-A22 mRNA for transcription factor CCAAT, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020226778.1	0.0	nuclear transcription factor Y subunit A-10 isoform X1
TrEMBL	B3IX28	0.0	B3IX28_LOTJA; Transcription factor CCAAT
STRING	XP_007162983.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3794	34	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.2	9e-62	nuclear factor Y, subunit A10

Publications ? help Back to Top
Asamizu E,Shimoda Y,Kouchi H,Tabata S,Sato S A positive regulatory role for LjERF1 in the nodulation process is revealed by systematic analysis of nodule-associated transcription factors of Lotus japonicus. Plant Physiol., 2008. 147(4): p. 2030-40 [PMID:18567832]