PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

Protein Properties

Length: 277aa MW: 32020.2 Da PI: 7.6677

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v4722780.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	105.5	2.8e-33	77	178	1	99
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k ltpsdv+k++rlv+pk++ae+h ++ + +++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F++++ + + Lj1g3v4722780.1 77 FEKPLTPSDVGKLNRLVIPKQHAEKHfplDSAESKGMLLSFEDESGKLWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFHRHRAHPHR 170 99*************************888889*************************************************87767777 PP .EEEEE-S CS B3 92 lvvkvfrk 99 ++++ +r+ Lj1g3v4722780.1 171 FFITCRRR 178 78888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.2E-40	71	184	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.57E-29	76	177	No hit	No description
SuperFamily	SSF101936	3.14E-32	76	179	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	14.522	77	179	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.8E-30	77	178	IPR003340	B3 DNA binding domain
SMART	SM01019	4.1E-24	77	178	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0080167	Biological Process	response to karrikin
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MSINQQQLWW TQHQQQNLIH PQFHNPLSSS PSPSPSSSST HRREDGELDQ EEQDYSITRS 60 RNKEDEEPAE EEMEGMFEKP LTPSDVGKLN RLVIPKQHAE KHFPLDSAES KGMLLSFEDE 120 SGKLWRFRYS YWNSSQSYVL TKGWSRYVKD KRLDAGDVVL FHRHRAHPHR FFITCRRRNA 180 QPAPNAAAAF YPPAPHPFTY HPHLHTGGGS QGQNHKEESA PGGNSSGSKV LRLFGVNMEC 240 QLPDSQTQQF YHHHHQQPSS YSSPNNTHHH MLRQQPY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	3e-47	72	178	3	113	B3 domain-containing transcription factor NGA1
5os9_B	3e-47	72	178	3	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v4722780.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	8e-31	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003553608.1	3e-89	B3 domain-containing protein At2g36080
Refseq	XP_028218899.1	3e-89	B3 domain-containing protein At2g36080-like
Swissprot	Q8GYJ2	2e-61	Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBL	A0A445FIT9	7e-88	A0A445FIT9_GLYSO; B3 domain-containing protein
TrEMBL	K7MZA2	7e-88	K7MZA2_SOYBN; Uncharacterized protein
STRING	GLYMA19G38340.2	1e-88	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5739	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36080.1	1e-49	B3 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Tanaka M, et al. The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation. Plant Cell, 2016. 28(11): p. 2830-2849 [PMID:27760805]