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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v4699740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | GRF | ||||||||
Protein Properties | Length: 383aa MW: 41881.4 Da PI: 8.2606 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 81.7 | 6.7e-26 | 140 | 183 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrg++rsrk++e Lj1g3v4699740.1 140 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGKNRSRKPVE 183 79***************************************987 PP | |||||||
2 | QLQ | 51 | 4.5e-18 | 71 | 107 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+F+ +Q+q+L+ Q+l+++y++a+ vPpeLlq+i+k Lj1g3v4699740.1 71 SYFSLSQWQELELQALIFRYMLAGTSVPPELLQPIKK 107 78*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.4E-10 | 71 | 107 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.7E-13 | 72 | 105 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.083 | 72 | 107 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.463 | 140 | 184 | IPR014977 | WRC domain |
Pfam | PF08879 | 8.4E-22 | 141 | 183 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MDFHLKQWRN QHESEEQQHS SKMPKLLPEP PSTASALPLF VPEPNSKVSN LSDSSTFPST 60 TTTNRFPRMA SYFSLSQWQE LELQALIFRY MLAGTSVPPE LLQPIKKSLL HSPSFFLHHP 120 LQHYQPTLLQ SGYWGRAAMD PEPGRCRRTD GKKWRCSRDV VAGQKYCERH MHRGKNRSRK 180 PVELPTPTSA GGGAGVGGGS FCASSSTSSP PLVTASMKSP FDLLHLNERS SGTKKEDKSL 240 FESQDHVSGD GRSGGHMLRH FFDDWPRSLQ DSDNNNAENN TGRVNSSTCL SISMPGNTSS 300 SDVSLKLSTG YGGSEDPGTR SENMGMEAEQ VQLNWAGGWA SSGNHSMGGP LAEALRSSTS 360 TSSPTSVLHQ LHRGSGSETS FIS |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269|PubMed:20023165}. | |||||
Uniprot | TISSUE SPECIFICITY: Strongly expressed in actively growing and developing tissues, such as roots, upper stems, and shoot tips containing the shoot apical meristem (SAM) and flower buds. Also expressed in mature flowers, but weakly expressed in mature stems and leaves. {ECO:0000269|PubMed:12974814}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v4699740.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC170988 | 2e-53 | AC170988.5 Medicago truncatula chromosome 7 BAC clone mth2-53m12, complete sequence. | |||
GenBank | AC196856 | 2e-53 | AC196856.3 Medicago truncatula chromosome 7 BAC clone mth2-33h9, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007162865.1 | 0.0 | hypothetical protein PHAVU_001G187500g | ||||
Swissprot | Q8L8A7 | 6e-99 | GRF4_ARATH; Growth-regulating factor 4 | ||||
TrEMBL | V7CXL5 | 0.0 | V7CXL5_PHAVU; Uncharacterized protein | ||||
STRING | XP_007162865.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7895 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52910.1 | 2e-95 | growth-regulating factor 4 |
Publications ? help Back to Top | |||
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