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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Lj1g3v4693080.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family |
Trihelix |
Protein Properties |
Length: 467aa MW: 53045.8 Da PI: 6.7018 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Lj1g3v4693080.1 | genome | Kazusa | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 76.6 | 3.9e-24 | 125 | 227 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsesss 77
+Wt+ +v++Li a+ +++++ + g+ +kk++W++vs++m+e+g+ +sp+qC++k+++lnkryk+++++ +k+ ++++++
Lj1g3v4693080.1 125 KWTDTMVRLLIMAVYYIGDEAGGGSeggsdpagkkkatgllQKKGKWKSVSRAMMEKGYYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVE 218
7**************99999998766778889999999**9**********************************************559**** PP
trihelix 78 tcpyfdqle 86
+ +++d ++
Lj1g3v4693080.1 219 NQSLLDTMD 227
*****9997 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
Pfam | PF13837 | 2.0E-21 | 123 | 252 | No hit | No description |
Sequence ? help Back to Top |
Protein Sequence Length: 467 aa
Download sequence Send
to blast |
MMEPNGLGGG IFPTISSSGL LGVENQNPLN QQNHHQNPLP LHHHSQMLSY ATTHHDNTDT 60 HIQQPIKHGY PYSAKTNNNN SNGTNNNSNN KAQSNINLSD EDEFAADDNS SADPKRKNSP 120 WHRMKWTDTM VRLLIMAVYY IGDEAGGGSE GGSDPAGKKK ATGLLQKKGK WKSVSRAMME 180 KGYYVSPQQC EDKFNDLNKR YKRVNDILGK GTACRVVENQ SLLDTMDLSP KMKEEARKLL 240 NSKHLFFREM CAYHNSCGHG TNNNAGGTSS NGQTEAGTES LPQQQQQHKC LHNGVGSLRM 300 LKEKSGELEE EEEEIEDDEW EDSSSEEEGE SGSKGQAEED ENWNNDVVRK RARKSGVMPS 360 QVMQQLSSEV SGVLQDGGKS AWEKKQWMKK RMVQLDEQQV SYRAEAFELE KQRLKWARFS 420 SKKEREMERH KLENERSRLE IERMILLLRH KELELMNIQQ QQQHSST
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Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G10040.1 | 1e-89 | sequence-specific DNA binding transcription factors |