 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Lj1g3v4579590.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
Family |
ARF |
Protein Properties |
Length: 714aa MW: 78509.9 Da PI: 7.3163 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Lj1g3v4579590.1 | genome | Kazusa | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 71 | 1.5e-22 | 140 | 241 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
f k+lt+sd+++ g +++p+ +ae++ ++ + + +d +g+ W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF +
Lj1g3v4579590.1 140 FAKTLTQSDANNGGGFSVPRYCAETIfppldysADPPVQ--NILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNHKKLIAGDSIVFL--RA 229
89*****************************97656666..69999********************************************..44 PP
SEE..EEEEE-S CS
B3 88 sefelvvkvfrk 99
+++ l+v+++r+
Lj1g3v4579590.1 230 ENGDLCVGIRRA 241
88999****997 PP
|
2 | Auxin_resp | 110.4 | 1.8e-36 | 310 | 392 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83
aa+ a+++++FevvY+Prast+eF+vk++ v++a++v++++GmRfkm fetedss++++ +Gtv++v+ +dp rW++S+Wr+L+
Lj1g3v4579590.1 310 AATLAANMQPFEVVYYPRASTPEFCVKASLVRAAMQVRWCPGMRFKMPFETEDSSRISWfMGTVSSVQVADP-RWSDSPWRLLQ 392
68899*******************************************************************.*********97 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 714 aa
Download sequence Send
to blast |
MISGICSEKK LLYLAIIEMM VSTESKEKLK EVVERCLDPQ LWHACAGGMV QMPQVNAKVF 60 YFPQGHAEHA CEPVDFRSYN KLPSCIQCRV TGIKYMADPE TDEVCARIRL VPLHSNEVDF 120 DDDGVGGGVN ETKDNKPPSF AKTLTQSDAN NGGGFSVPRY CAETIFPPLD YSADPPVQNI 180 LAKDVHGEIW KFRHIYRGTP RRHLLTTGWS TFVNHKKLIA GDSIVFLRAE NGDLCVGIRR 240 AKRGGSGGGP DPSSGWNSAG GTGFHPLSYA GFADSNQLLR NGHGNGNGLS PTSASLMCRG 300 KVRAQAVIEA ATLAANMQPF EVVYYPRAST PEFCVKASLV RAAMQVRWCP GMRFKMPFET 360 EDSSRISWFM GTVSSVQVAD PRWSDSPWRL LQVAWDEPDL LQNVKRVSPW LVEIVSNMPN 420 IHLSPFTPPR KKMRLPQHPD FPLDGQISVP TFPGNHLLGP GTSFDRLYEN SPAGMQGARH 480 AHYGISLSDL HLSKLQSGLF SSNFTQFDHI HHAAAATPMR VPNINPTLQK PSTSENISYL 540 LSMTTTTNST QSKKPDDDDV KPPRLVLFGQ TILTEQQISL SSSADNTVSP VLTGNNSSSD 600 GNADKKTNFS NGFGSALDRQ DSLPSLETGH CKVFMESEDV GRTMNLTLLN SYDELYKKLA 660 DMFGIQKSGV LSHVLYCDKT GAVKHIGDEA FSDFTKTARR LTILMDSSSD NGRV
|
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AP010294 | 0.0 | AP010294.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT45O08, TM2015, complete sequence. |