 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Lj1g3v4579400.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
| Family |
NAC |
| Protein Properties |
Length: 324aa MW: 37166.9 Da PI: 7.1638 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lj1g3v4579400.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 166.8 | 7.5e-52 | 11 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94
lppGfrFhP+deel+v+yL++kv++ +l++ ++i+e+++yk++Pw+Lp+k+ +e+ewyfF++rd+ky++g r+nra+ sgyWkatg+dk++l+
Lj1g3v4579400.1 11 LPPGFRFHPSDEELIVHYLRNKVTSCPLPA-SFIAEIELYKYNPWELPSKALFGEEEWYFFTPRDRKYPKGVRPNRAAGSGYWKATGTDKPILT 103
79****************************.89***************8777899**************************************9 PP
NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
+ + + +g+kk Lvfykgr pkg+ktdWvmheyrl
Lj1g3v4579400.1 104 ScGMKSIGVKKALVFYKGRPPKGSKTDWVMHEYRL 138
977888***************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 324 aa
Download sequence Send
to blast |
MDKDPNLEIQ LPPGFRFHPS DEELIVHYLR NKVTSCPLPA SFIAEIELYK YNPWELPSKA 60
LFGEEEWYFF TPRDRKYPKG VRPNRAAGSG YWKATGTDKP ILTSCGMKSI GVKKALVFYK 120
GRPPKGSKTD WVMHEYRLHD SMISNSKQRG SMRLDEWVLC RVRQKISSPR STWEESNEHS 180
YEPVTSNFQQ INESSYSEPV KNSAQNEFPM LPYILASKTV LPNSIGISSS SGFGSNGNDD 240
IKPYASLHED SLSIMEAKFL ASATECLLNP LKRKATEENE LDFYAVNKKL CKEVDDREQK 300
HETDTAIGYN FNYFNQWTSI MQPQ
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 9e-70 | 2 | 168 | 8 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 9e-70 | 2 | 168 | 8 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 9e-70 | 2 | 168 | 8 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 9e-70 | 2 | 168 | 8 | 168 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 1e-69 | 2 | 168 | 11 | 171 | NAC domain-containing protein 19 |
| 3swm_B | 1e-69 | 2 | 168 | 11 | 171 | NAC domain-containing protein 19 |
| 3swm_C | 1e-69 | 2 | 168 | 11 | 171 | NAC domain-containing protein 19 |
| 3swm_D | 1e-69 | 2 | 168 | 11 | 171 | NAC domain-containing protein 19 |
| 3swp_A | 1e-69 | 2 | 168 | 11 | 171 | NAC domain-containing protein 19 |
| 3swp_B | 1e-69 | 2 | 168 | 11 | 171 | NAC domain-containing protein 19 |
| 3swp_C | 1e-69 | 2 | 168 | 11 | 171 | NAC domain-containing protein 19 |
| 3swp_D | 1e-69 | 2 | 168 | 11 | 171 | NAC domain-containing protein 19 |
| 4dul_A | 9e-70 | 2 | 168 | 8 | 168 | NAC domain-containing protein 19 |
| 4dul_B | 9e-70 | 2 | 168 | 8 | 168 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed during pollen development and maturation. {ECO:0000269|PubMed:21107887}. |
| Uniprot | TISSUE SPECIFICITY: Expressed specifically in the tapetum. {ECO:0000269|PubMed:21107887}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP010293 | 0.0 | AP010293.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjB07N04, BM1879, complete sequence. |
