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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v4565010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | C2H2 | ||||||||
Protein Properties | Length: 175aa MW: 19793.7 Da PI: 9.7219 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.6 | 0.0018 | 38 | 60 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs+ L H +H Lj1g3v4565010.1 38 FECKTCNRKFSSFQALGGHRASH 60 89**********99999998886 PP | |||||||
2 | zf-C2H2 | 11.9 | 0.00068 | 85 | 107 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg Fs L H+r+H Lj1g3v4565010.1 85 HVCSVCGLGFSLGQALGGHMRKH 107 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 7 | 1 | 25 | No hit | No description |
PROSITE profile | PS50157 | 10.554 | 38 | 65 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.19 | 38 | 60 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 9.3E-10 | 38 | 60 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.77E-8 | 38 | 107 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 40 | 62 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.3 | 85 | 107 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.6E-8 | 85 | 108 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.494 | 85 | 112 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 87 | 107 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MKRQRDNEGT ESFDLTNCLM LMLSCPKQKR TINESVEFEC KTCNRKFSSF QALGGHRASH 60 NHKRVKLEEQ AKTPSLWDNN KPRMHVCSVC GLGFSLGQAL GGHMRKHRNN EGFSSSSSSS 120 SSYSIKEEVA KFPVLKRLNS SKRVLCLDLD LNFPPMENDF MFGMKSPSPV PLSLF |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.7866 | 0.0 | floral bud| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v4565010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT146708 | 0.0 | BT146708.1 Lotus japonicus clone JCVI-FLLj-8I13 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004493902.1 | 7e-64 | zinc finger protein ZAT11-like | ||||
TrEMBL | I3T1W0 | 1e-124 | I3T1W0_LOTJA; Uncharacterized protein | ||||
STRING | XP_004493902.1 | 3e-63 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 2e-36 | C2H2 family protein |