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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v4483600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 195aa MW: 22186.8 Da PI: 9.0553 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.7 | 0.00011 | 22 | 59 | 13 | 55 |
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ Lrel+P+ a K s + Le+A++++ Lq Lj1g3v4483600.1 22 RQLIQDRIKDLRELVPNgA------KCSIDSLLERAIKHMLFLQ 59 67799************77......777778*********9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.493 | 9 | 58 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.1E-5 | 22 | 65 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.01E-5 | 22 | 64 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MSRFSKKRAR PGESCRPRPR DRQLIQDRIK DLRELVPNGA KCSIDSLLER AIKHMLFLQS 60 VTKHADKLTK FDDTKSKLHR METDVIGTST YEQGSSWAME VGGPLKVHSI LVENLSKDGQ 120 MIVEMLCEEC SHFLEIADVI RSLGLTVLKG ATKAHDEKIL LCFVVEGQNN RNVHRLDILW 180 PLVQILQSKS TMHAQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.4986 | 0.0 | cell culture| floral bud| pod| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may regulate root development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v4483600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT143225 | 1e-170 | BT143225.1 Lotus japonicus clone JCVI-FLLj-10E5 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022634828.1 | 1e-120 | transcription factor bHLH155 isoform X2 | ||||
Swissprot | P0C7P8 | 3e-86 | LHWL1_ARATH; Transcription factor EMB1444 | ||||
TrEMBL | A0A3Q0ESV7 | 1e-119 | A0A3Q0ESV7_VIGRR; transcription factor bHLH155 isoform X2 | ||||
STRING | XP_007162528.1 | 1e-117 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31280.1 | 6e-78 | conserved peptide upstream open reading frame 7 |