PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4483350.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 222aa    MW: 24776.8 Da    PI: 7.5707
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4483350.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.2e-053254123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C++ F++   L  H+++H
  Lj1g3v4483350.1 32 YSCSFCKREFKSAQALGGHMNVH 54
                     99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.76E-62958No hitNo description
Gene3DG3DSA:3.30.160.606.5E-43057IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00523254IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1773259IPR007087Zinc finger, C2H2
PfamPF139125.6E-63255IPR007087Zinc finger, C2H2
PROSITE patternPS0002803454IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MEGNYLTRNS HKGESFGFEE HTWGTSWPAR NYSCSFCKRE FKSAQALGGH MNVHRRDRAR  60
LRSSLMSSWV SHDQCSTPKP NPSCTKANPT HHINLSLPSS SSTSSSYVSN ALLNCAHRSP  120
LYCPCLTLSS SSLPPASTSG DKKPRLSSFQ IPPLNPQNRE INMIKETKSG FGVEGLQDCE  180
ILEDEHKVLE DSTEQHITLE LGIGLLEHPK EKLDLELRLG HF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-112754229superman protein
2l1o_A3e-112754229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4483350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150374e-54AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027349019.13e-86transcriptional regulator SUPERMAN-like
TrEMBLA0A151TUI04e-80A0A151TUI0_CAJCA; Transcriptional regulator SUPERMAN
STRINGGLYMA19G34531.16e-69(Glycine max)
STRINGXP_007144930.15e-69(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.16e-20C2H2 family protein