PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj1g3v4450440.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

bHLH

Protein Properties

Length: 297aa MW: 31703 Da PI: 6.7291

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v4450440.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.3	7.6e-10	146	190	5	54
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a++L + v+Y+k L Lj1g3v4450440.1 146 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 190 99*********************55......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.4E-15	139	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.12	141	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.0E-15	143	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-7	146	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.5E-11	147	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0031347	Biological Process	regulation of defense response
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MANNPSDAPA ADDFLEQILG LPPFGSGDSG LVGPDIGLAG TAPMMLQLNS ADHGNHHHLA 60 AGGPFHAPVY QLGLSLDQGK VVGGGGFLKP EDASGSGKRF RDDVVDGRPK NVYHGQPMST 120 TMPAAPHPPA MRPRVRARRG QATDPHSIAE RLRRERIAER IRALQELVPS VNKTDRAAML 180 DEIVDYVKFL RLQVKVLSMS RLGGAGAVAP LVTDIPLSSV EEEGGEGARN RPAWDKWSND 240 GTEKQVAKLM EENVGAAMQF LQSKALCIMP ISLASAIYQS QPPDSSSMVK PETNPPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	155	RLRRER

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.10765	0.0	cell culture\| protoplast\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Required for ovule fertilization. {ECO:0000269\|PubMed:15634699}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v4450440.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP006680	0.0	AP006680.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT45D03, TM0375a, complete sequence.
GenBank	FJ379746	0.0	FJ379746.1 Lotus japonicus putative basic helix-loop-helix protein BHLH3 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027350392.1	1e-179	transcription factor UNE12-like isoform X1
Swissprot	O22768	1e-126	UNE12_ARATH; Transcription factor UNE12
TrEMBL	C0JP11	0.0	C0JP11_LOTJA; Putative basic helix-loop-helix protein BHLH3
STRING	GLYMA19G34360.1	1e-176	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5449	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02590.2	1e-103	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]