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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Lj1g3v4317600.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family |
C3H |
Protein Properties |
Length: 164aa MW: 17374.7 Da PI: 9.6919 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Lj1g3v4317600.1 | genome | Kazusa | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 20.6 | 7.6e-07 | 36 | 59 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25
k ++C f+ t C++G++C+F H
Lj1g3v4317600.1 36 KSKPCTKFFSTAGCPFGESCHFLH 59
7789******************** PP
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2 | zf-CCCH | 29.5 | 1.3e-09 | 101 | 126 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt++C+ f Ck+Gd+C+FaHg+
Lj1g3v4317600.1 101 KTRICNKFNTAEGCKFGDKCHFAHGE 126
8***********************96 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00356 | 0.91 | 34 | 61 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.709 | 34 | 62 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-6 | 35 | 60 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.3E-5 | 36 | 59 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-8 | 36 | 59 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.4E-14 | 98 | 129 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-8 | 98 | 130 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.61 | 99 | 127 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.6E-4 | 99 | 126 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.6E-7 | 101 | 126 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 164 aa
Download sequence Send
to blast |
MDFRKRGRPE PGFNSNGGIK KSKQELESLS SGVGSKSKPC TKFFSTAGCP FGESCHFLHY 60 VPGGYNAVAH MMNLAPSAQA PPRNVAAPPP PVPNGSTPAV KTRICNKFNT AEGCKFGDKC 120 HFAHGEWELG KHIAPSFDDH RPIGHAPAGR IGGRMEPPPG PATG
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