PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v4317520.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | G2-like | ||||||||
Protein Properties | Length: 255aa MW: 28332.8 Da PI: 9.1491 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.4 | 2.9e-32 | 81 | 135 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHe+Fve+v++LGG++kAtPk+il++m+ +gLt++h+kSHLQkYR Lj1g3v4317520.2 81 KTRIRWTKDLHEKFVECVNRLGGADKATPKAILKMMDSDGLTIYHIKSHLQKYRN 135 68****************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.082 | 78 | 138 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-17 | 79 | 135 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.6E-24 | 81 | 136 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.3E-28 | 81 | 136 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.2E-10 | 85 | 134 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.5E-18 | 166 | 212 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MVKSQLNSNQ DNKISCGDFP SSKFVPIEPQ KLLYDGVTSV SWSSSSLNKG NQDCMAVSGS 60 SGSVSTAFGN SSSNGSVILS KTRIRWTKDL HEKFVECVNR LGGADKATPK AILKMMDSDG 120 LTIYHIKSHL QKYRNAKFMP ESAQGISNKR VHTEDVHHLD FKTGLQIREA LQLQLDTQRR 180 LHEQLELQRA LQLRIEEQGK QLKKMFDQQQ RTSDNLLNTP DIANDATAIS HKDVEGSVSE 240 GASDSFFSSK STKIT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-23 | 81 | 138 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-23 | 81 | 138 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 3e-23 | 81 | 138 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-23 | 81 | 138 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-23 | 81 | 138 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-23 | 81 | 138 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-23 | 81 | 138 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-23 | 81 | 138 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-23 | 81 | 138 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-23 | 81 | 138 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-23 | 81 | 138 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-23 | 81 | 138 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.13634 | 2e-35 | cell culture| protoplast |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v4317520.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009661 | 1e-114 | AP009661.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT38A19, TM0221, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027353137.1 | 1e-117 | myb family transcription factor PHL5-like | ||||
Swissprot | Q0WVU3 | 5e-69 | PHL5_ARATH; Myb family transcription factor PHL5 | ||||
TrEMBL | A0A1S2XRU8 | 1e-115 | A0A1S2XRU8_CICAR; protein PHOSPHATE STARVATION RESPONSE 3-like | ||||
TrEMBL | V7CVV7 | 1e-114 | V7CVV7_PHAVU; Uncharacterized protein | ||||
STRING | XP_004493572.1 | 1e-115 | (Cicer arietinum) | ||||
STRING | XP_007162313.1 | 1e-115 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.1 | 7e-54 | G2-like family protein |