PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4302180.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 87aa    MW: 10090.7 Da    PI: 10.6091
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4302180.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-122772655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     +++Er RR ri +++ +L+el+P++    +k  s ae+L +A  YI++Lq
  Lj1g3v4302180.1 27 SIAERVRRTRISERIRKLQELVPNL----DKQTSTAEMLDLAAVYINDLQ 72
                     689*********************9....788*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.3732171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-162384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-82574No hitNo description
Gene3DG3DSA:4.10.280.103.4E-142684IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-92772IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-102777IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MDNLLEFTDS VPTNVRAKRG FATHPRSIAE RVRRTRISER IRKLQELVPN LDKQTSTAEM  60
LDLAAVYIND LQKQFKTLSE KRAKCKC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.1041e-125root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4302180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014492120.17e-46transcription factor bHLH130-like
RefseqXP_020213881.18e-46transcription factor bHLH130
SwissprotQ66GR35e-37BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A4D6M8826e-46A0A4D6M882_VIGUN; Phytochrome-interacting factor 3
STRINGXP_004493549.13e-44(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91323043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.14e-30bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]